BAC Information

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BAC

Clone NameMSMg01-088L16
Chromosome7 (Build37)
Map Location 134,934,105 - 134,934,380
singlet/doubletsinglet
Overlap geneSetd1a
Upstream genePpp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c
Downstream geneHsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088L16.T7 (MSMg01no088_l16.b1)MSMg01-088L16.TJ (MSMg01no088_l16.g1)
ACCAG307410AG307411
length7321,315
length of high quality
(start - end)
281 (39 - 319)---
definitionCHROMAT_FILE: MSMg01no088_l16.b1 PHD_FILE: MSMg01no088_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:18 2005CHROMAT_FILE: MSMg01no088_l16.g1 PHD_FILE: MSMg01no088_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCTG
GGATAAACAGCCCATGCCTTGAAAGTATGCCTTTAATCCTAGCACTCAGG
AGGCAGAGGCAAGTGGACCTATGTGATTTGAGATCATCCTGGTCTACACA
GTAAGTCCCAGGATATACAAGGCTACACAGAGAGACCCTGTCTTGAAAAA
CAAAATTTAAAAAAACAAAAATAAAGGCAAGTCCTGGTGATACACGTAAA
CCCAGAACTCTGGAGGTGGAGAGAGGAGACTGGCCGGAGAGCATGCTCAT
CTGTATATCAAGTTAGGGCGCAGCATGGGCTGTGTGAGACTCTTCTTGAA
AAACAAAACAAAACAAAACAAAACAAGGTGCCAGCAAGATGACTCAGTAG
GCACCTGTTGCCAAACTGATGACCCGAGTTTGATCAATAAAACTTACAAG
ATGGAAGGATACACACACATGCATGGCACAGTCTCACAACATTATATACA
TACCATACTTATGGCCGATCGTTTTTGGGTGATACAGCACTATGAAATTC
CCGATAATTATATTGCCCCAGGGCTATAATTCTAGCACTTGAAAGGCTTG
TACCCCCATGAGGCCCCGGTAGAGAGACCCACAGTAATATAAGAACAAAC
CTACATCACTTGATTGACTTCATAATGTCAGTCCCCCCAATGTTTTTACC
GATCTTTATCAACTTGGCACATGCCCGACACT
CTCCCTTCATCTCCTTTTGCCACCTAATTACACGCTCACCCCCGTCGTCC
CTCAACACGCCAGCCGTGTAGCCGGCGCGCACCTCTACTCTCATTCACGC
CGCCGCGTTATTGTCCCTAACCGCCTCGCTATTTCTCCTCGGGTCCGGCG
GCGGCGATGAGGACCCCAGGTTTATTGTATGCTATATTACACCTTATCGC
GGGCCGCAAATATAGCGCGCAATGACGTTATCGCGCCCCTCTTTTTGTCG
TGTTATGCGCGCGGATACGTCGACTCCTTTTCCTCATATCGTCACCCCCC
GTTGCCTTTATCCGCCGTTTGCGGGGGCTTTCGCCGCCTTTTTATACTCC
CCGTTTTTTATAATCGTTCCCCCACCTTCTCACTCCCCCCGCTTTTTATG
ACCCGCCTATTATCGCCGCCCGCCGCTTGGATGTTGGGTGTTCTTCCCGT
ATCTCCCCCCACGTTATTTATTCTACCCCGTTATCTCTCTTCCGCGCGAA
TGTCTTGTCACCCGCGCGTGGGCTTTATTTACCCCCACGCCTATAACAGC
CACTTTCATGTGTTCTTTAGACGGTCCGAACATCCGCCGACCTATACCGC
TCGTTTATAGCGCCGCTATACCCGGTCTCTAACTTTTTTACGATAAAGTT
CACGCTACAGAATATGCGGGCATGAACAAAACGGGCAACCGTTAAATAAT
CCCGCACCGCCGCCGAACATGAAAAATAATGCGCGCGAATACCCCATTCC
AGCCGTAATTATATGTATAGAGATCGAATAACGTGAGAGAGCCGATCGAT
AGAGACATACTGTGCATCTGGAACGCGGGGTAATACACAAATGTGATACA
CAAGTTGGTAAAACGACCGACTGGCTGACGGGCGGATCGTAGTATTTATA
TGTATAACAGTACTGGCGCGGACTACCGATTCGTCGGTACACATAGTGGA
TTGGCGGGGTTGCTTACTATGGCGCATTTTTTACACCCACTCAAACTCTG
CGCCGCCCGCCATAGCAACATATTAGGTAACGCAATAGAGCGGGGGGAAC
GAAAATACGCGGATAATATGCGGGCGAAAAGCGGCGTAACCAATCGTGTG
ACATCTGCGCTATAATATCTGCCGGCGCCCGCCGCCGCTGTTTTGTCTTA
AGATTAAAAGTGCGTAGCGGCGCGGTGATAAACATGTGTTACGCTTGTTG
TGGTGACCATCGTTTGTCGCCGCCTCCGCGCGCATACATAGACAGCATGT
ATGTGCTACCCAATGACCGCGGCGCTATTATCAATGCGCGCCCGCGTATA
AGCCTCGAGTATAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_l16.b1 MSMg01no088_l16.b1 CHROMAT_FILE:
MSMg01no088_l16.b1 PHD_FILE: MSMg01no088_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:18 2005
         (281 letters)



>mm_chr7_134933738_134934418
          Length = 681

 Score =  511 bits (264), Expect = e-149
 Identities = 273/276 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgggataaacagcccatgccttgaaagtatgcctttaatcctagcactcaggag 64
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gaattctgggataaacagtacatgccttgaaagtatgcctttaatcctagcactcaggag 584

                                                                       
Query: 65  gcagaggcaagtggacctatgtgatttgagatcatcctggtctacacagtaagtcccagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gcagaggcaagtggacctatgtgatttgagatcatcctggtctacacagtaagtcccagg 524

                                                                       
Query: 125 atatacaaggctacacagagagaccctgtcttgaaaaacaaaatttaaaaaaacaaaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 atatacaaggctacacagagagaccctgtcttgaaaaacaaaatttaaaaaaacaaaaat 464

                                                                       
Query: 185 aaaggcaagtcctggtgatacacgtaaacccagaactctggaggtggagagaggagactg 244
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 463 aaaggcaagtcctggtgatacatgtaaacccagaactctggaggtggagagaggagactg 404

                                               
Query: 245 gccggagagcatgctcatctgtatatcaagttaggg 280
           ||||||||||||||||||||||||||||||||||||
Sbjct: 403 gccggagagcatgctcatctgtatatcaagttaggg 368


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)