BAC Information

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BAC

Clone NameMSMg01-089E04
Chromosome7 (Build37)
Map Location 115,571,595 - 115,571,840
singlet/doubletsinglet
Overlap genenone
Upstream geneSyt9, Olfml1, Ppfibp2, 5330417H12Rik, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497
Downstream geneOlfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1, Stk33, EG668320
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089E04.T7 (MSMg01no089_e04.b1)MSMg01-089E04.TJ (MSMg01no089_e04.g1)
ACCAG307805AG307806
length6551,218
length of high quality
(start - end)
324 (6 - 329)---
definitionCHROMAT_FILE: MSMg01no089_e04.b1 PHD_FILE: MSMg01no089_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:00 2005CHROMAT_FILE: MSMg01no089_e04.g1 PHD_FILE: MSMg01no089_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:00 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATGATCCGCGGAATTCTTTATATATTTCAATGTAACCCCTCGGCTGGATA
TAGGGTGTGTGAAGATCCTTTCTGTATCTGTATGAGTTTTCCTTGAATTA
CCCTGACTTGCTTTTTTTCTCTTAAGGATATAAGTATGAGTATACTTGCT
ATTTTCCATCTGACAATCTTTTGTCTACTCTCCTTACCTACAAGCCCTTT
TCATTTTCTTTTTTTAAATATCACTTGCCTCATGGATATTTCTTTGCCAG
TCTACACAAGCTAATATGACCCATCCCAACCATAGCTTCCTTTACATTAA
TTACAGTTCTATTTGTTTTATGCTAATATGTACGCACCTCTACCACATAC
ATTAAAAGAATTAGGTTTATGTAACTAATACTAAAACTGACAGAGATGGC
AACCTCATACTAAGAACAACAATATCAACTAGCCCAGACTCCTCAGAGCT
CCCAGAGACTAAGCCACAAACCATAGAGCATACATGAATTGTTCCGTGAG
CCCTGTCACTCATGTACCATAGAACTAACTTGTCTGTCTTTATTGCGAGA
GAATGTCCCTAATCTCTTACAGACATGATGCCCCCTACTACCGATGATGC
CGCAAGTGTTGCGATATTTACCACTGATTGTTGACTATCATCCTTCTCCT
CCCCA
CGGTTGGCCTTTTGTGGCTGNCTTTTTGGGGTGGGGGGGTCTGGGGGGTG
GGGGGTGGGGGCTGGGCTGTGGCGCGGGGGGCCGGCGGTCCCGGTTTGGC
GGGGGGGTGGGTGCCCCCCGCGGTGGCGTGGCTGGTGGGCGTTGTGTGCG
TGTGGTGGCGTTTGGCTATTCTTTCCTGCTCGTGTGCCGGCCTGCGCTTC
CCNCGCGCCGCTCGTCCCGCTTGCCTCTCGCCTGTGCATCCGCCGTTGTC
CGGCGTTGTTGCTTTTGGGCCTCGCGCTTGTCCGGGGTGCCTTCTTTTGT
GCGCGCCGTCGGCCTTGCCCGGGCGGCTGCGGTGTTGCCTGCCTGTCTCT
ATCGTTGGTTGGTTGCGTGGCACTCACTTCCAACTCGCCCTTACACACTC
CAGTAAATATTTAACCTTAAGCGTGCGCCATTAATTAACATTAATAAACC
CTATATTTTTAAACATACCGAAGAAACCGTAGTTACATAAGACAAAAAAT
ATGAAGTATATTCCGCCGGTGCGCGTGTACGGAGGCAGATGATGAAAAGA
GTATAGAAGAACGAAAGCGTATATGCAGTCCAGAGAGGGAAATAAACATT
AATAACCACATGCACCAATTACCCCCCTTCAACACACATATTAACACCTT
CATATTACATCACTACCCCTATTATTACTTTCCCCTCCATTTACCTTACA
GTATATATATAAGAACAAATATATATAAAAAATAAATATACCTACCACAC
ACTAATAACATAATAATAAAAGATAACACAATAACATGAAACAATAAAGC
CGGACGTAGGTGGAGCTGCGTGATTACTGTACAAAGATAACTGACACAGC
ACGTTCTGATATCACGCGATGTTATGCATATCTATCGATATGCTTATTAG
ACACACGTGCGCATTTATATCAGCATTATCAACACAATATATTATGACTA
TACATCGATTATACATATTCAAACAACGAAACACGACCAAATCACATGAT
ATAATATTATGCAACATATACGCAATTACACCATATATGTATCTAGATAA
GAGTTACAGGGAATTACGCTATTTGTTCAACCGCACTACTTATTATGTCA
CCACACCCACAGTTCTTCATATTATTATTTACTCGTAACACATTAGGTAC
AAGTGTGTTGCGGTAGATTGCGCCACACACCAGATTATATATCATCTTTA
TATATCGCACCNTCACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_e04.b1 MSMg01no089_e04.b1 CHROMAT_FILE:
MSMg01no089_e04.b1 PHD_FILE: MSMg01no089_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:00 2005
         (324 letters)



>mm_chr7_115571319_115572043
          Length = 725

 Score =  422 bits (218), Expect = e-122
 Identities = 239/246 (97%), Gaps = 1/246 (0%)
 Strand = Plus / Plus

                                                                       
Query: 77  atgagt-tttccttgaattaccctgacttgctttttttctcttaaggatataagtatgag 135
           |||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 277 atgagtctttccttgaattaccctgacttgctttttctctcttaaggatataaggatgag 336

                                                                       
Query: 136 tatacttgctattttccatctgacaatcttttgtctactctccttacctacaagcccttt 195
           ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 337 tatacttgctattttccatctgacaatcttttgtccactctcattacctacaagcccttt 396

                                                                       
Query: 196 tcattttctttttttaaatatcacttgcctcatggatatttctttgccagtctacacaag 255
           ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 397 tcattttcttttttttaatatcacttgcctcatggatatttctttgccagtgtacacaag 456

                                                                       
Query: 256 ctaatatgacccatcccaaccatagcttcctttacattaattacagttctatttgtttta 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ctaatatgacccatcccaaccatagcttcctttacattaattacagttctatttgtttta 516

                 
Query: 316 tgctaa 321
           ||||||
Sbjct: 517 tgctaa 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 725
Length adjustment: 9
Effective length of query: 315
Effective length of database: 716
Effective search space:   225540
Effective search space used:   225540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)