BAC Information

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BAC

Clone NameMSMg01-089E21
Chromosome7 (Build37)
Map Location 141,926,411 - 141,926,779
singlet/doubletsinglet
Overlap geneDock1
Upstream geneDhx32, LOC100043695, Fank1, Adam12, A130023I24Rik, 4933400E14Rik, LOC100043248, LOC100043699, LOC668750
Downstream geneB830028B13Rik, EG668693, LOC100043254, Foxi2, Clrn3, Ptpre, Mki67
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089E21.T7 (MSMg01no089_e21.b1)MSMg01-089E21.TJ (MSMg01no089_e21.g1)
ACCAG307839AG307840
length743754
length of high quality
(start - end)
373 (46 - 418)182 (74 - 255)
definitionCHROMAT_FILE: MSMg01no089_e21.b1 PHD_FILE: MSMg01no089_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:04 2005CHROMAT_FILE: MSMg01no089_e21.g1 PHD_FILE: MSMg01no089_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGTGTCAGCTACTTGAGATTTATAACTCCCCGAGGTCATCAGAC
TAATGTGTAAGGTCCTTAAAAGAACATTCATGGACCAGGAACCCATGCCA
GGTGTGAACTGGGGGAAGACAGCATTCAAATGTCTTCTTTTTTGGTCTCT
CCCTCATCTTCACACTCCGTTAAATATGTAAATTATAAAATTACTAATCA
TATGATTACTGCATAATGACATCTCTTTGGCTGATTACAAAATTGCCTTT
CTGAGCACTGTACTTTTAACATATGAAAAGGACGGCTTGGGTTCCTGTAC
TTCCCCGGCGCATAATTAGAGGGAAGGGAATAATTTAGAGGCATGGATGG
TGCTGACCTGCAAGATGGAACCCGTTCAGACAGATAAAATGTTTTGTATG
CAGAATTCTCGAAAGGAAGACAAAAGTAAGTTAGAAAAGCTTTGCCTTTT
TACGGAAATAATTGAAGTTCCCATTTAATATGCTTCTATCTGCTAGGGTC
ACAGTCTTTAGATAAGTCTGCTTGTATAGCAGTAGCGATATTTCTTAAGC
CTTTCTCAATTATATGAACCGCTGTGTGTTCCCATTTTACCCTATTTTCC
GCTTTGTTCACTATCTAAACGCCCATATCATCTTGGATTCTTTATTGTTT
CCCCCCCTTTTCCTCTTCGTTTTTTTTGCCCCCCCCTCTCTTT
GATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACATTCCAGAAGAGGAATGGCCCGGT
GCATCTATACATGATGAATAATCGTCACTGACAACTTGTCAGGCTTTAGA
ATGACCTCAACAACATACCTCTGGATTGTCTTTGAGGGTTGCTCCAGAGA
GCTTTAACTGGGGACAGCAGACTGCCTCTGATTATGGGAGGGGAGGTAGG
ATGGTTTTCTCTCTCTCCCCCCCCTCCTTTTCTTTCCCTCTTCTTCCCTT
CCTTTTTCCCTTCCCTTTTTCTTTCTTTTTTTCCCTCGCTCCCACTTCTA
CTTCATACTCTCATTTTTTTTCTACCTCCCTCTTTTTCTTCCCTCCTCTA
TCCCTTTTAGCCCTTTTCTTTATTTCTGCCCCCCCTGTTTTTCCCTTTTG
CCCCTCGTCTCTTCTCCCTCTTGTTCTCCTCTTCTTTCGTCCTTCCCTTT
TCCTCTTTTTTTATTCCTTTTTTTTCCCGTATCCGATTGCCCGTTCTACC
TCCTCTTTCTTTCTTCTTTATCATTTACTTTCAATCCACACCTATCCTCC
CCTATTCCAGTCTCTCTCTTTTCCCTTTTTCTTTTCCGGCCTCGCTCCGC
TCGTCTTCCATTTCTTTCTATTTTCATTCTATTTCCTCCCCGTTTTTCTG
CTCTTTCTTCCCCCCCCCCCCTCCTCTTCTTTTTGTCCCTCCCTTTTCCG
CTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_e21.b1 MSMg01no089_e21.b1 CHROMAT_FILE:
MSMg01no089_e21.b1 PHD_FILE: MSMg01no089_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:04 2005
         (373 letters)



>mm_chr7_141926207_141926979
          Length = 773

 Score =  698 bits (361), Expect = 0.0
 Identities = 367/369 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgtgtcagctacttgagatttataactccccgaggtcatcagactaatgtgta 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgtgtcagctaattgagatttataactccccgaggtcatcagactaatgtgta 264

                                                                       
Query: 65  aggtccttaaaagaacattcatggaccaggaacccatgccaggtgtgaactgggggaaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggtccttaaaagaacattcatggaccaggaacccatgccaggtgtgaactgggggaaga 324

                                                                       
Query: 125 cagcattcaaatgtcttcttttttggtctctccctcatcttcacactccgttaaatatgt 184
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 cagcattcaaatgtcttcttttttggtctctccctcatcttcacattccgttaaatatgt 384

                                                                       
Query: 185 aaattataaaattactaatcatatgattactgcataatgacatctctttggctgattaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaattataaaattactaatcatatgattactgcataatgacatctctttggctgattaca 444

                                                                       
Query: 245 aaattgcctttctgagcactgtacttttaacatatgaaaaggacggcttgggttcctgta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaattgcctttctgagcactgtacttttaacatatgaaaaggacggcttgggttcctgta 504

                                                                       
Query: 305 cttccccggcgcataattagagggaagggaataatttagaggcatggatggtgctgacct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttccccggcgcataattagagggaagggaataatttagaggcatggatggtgctgacct 564

                    
Query: 365 gcaagatgg 373
           |||||||||
Sbjct: 565 gcaagatgg 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)