BAC Information

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BAC

Clone NameMSMg01-090B12
Chromosome7 (Build37)
Map Location 117,401,708 - 117,401,995
singlet/doubletsinglet
Overlap geneSwap70
Upstream geneStk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1
Downstream geneEG668368, Sbf2, LOC668246, Adm, B430319F04Rik, Ampd3, Rnf141, Xlkd1, Mrvi1, Ctr9, Eif4g2, LOC100043221, LOC100042658
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090B12.T7 (MSMg01no090_b12.b1)MSMg01-090B12.TJ (MSMg01no090_b12.g1)
ACCAG308416AG308417
length686689
length of high quality
(start - end)
319 (45 - 363)289 (78 - 366)
definitionCHROMAT_FILE: MSMg01no090_b12.b1 PHD_FILE: MSMg01no090_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:08 2005CHROMAT_FILE: MSMg01no090_b12.g1 PHD_FILE: MSMg01no090_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAACTAATTCTAGCAGGCAAGGTGCTTTTCTTATTTAAAAACAAAA
ACTAACCACCAACACAACAACACCGCTAACTAGTTGATTACCTGGGTATG
GTGTACACTCTCAATTCTAGCACTCATGAGCCAGAAGCAGGTGGATGTGT
GACTATGAGGCCAGCCTGGTCTATAAAACAACAAAGCAAGCCCCGGTACA
GTAAAAGTAACTTTTCTTTTCCTGATGTAATTGTTGTTTCTGAGGCTTAC
TGCTTCTGTCTGCTATCCTAGTCCTAGTCCTGGAAGCCTCTAAACTCTAT
ACAATCTTATCTAGGCCTACAACGCTCTTGCCTCTGAGACTTGATGCTGA
GTAAGCTCACCCTTTCCTAGTTAGTTCTTTTCGATCTCTGGCGAGTTATA
GAATTAACTGTTCTGGCTCAGACTCTGATGCAAGCTGGCACCTCTCTCTC
TGCCTCTCCTGAACTGCTGTGTTTGGCCTCATACTAACTTTGGCAATCTG
TTCTTTTATTTGTTTGCTTGTTTGTTTGTTTATGTGTAGGAGTACACCAT
AGTTGTCTTTTGAACCCTCCAAAGAAAGCTTCCGATCTCATCTCACATGT
TTGTGAGCCACCCTTGCGGTTGCCGGTAATTGACCC
NCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCATCTGAGCGGAGACGCAGAG
GCACTCAAGGAGGCAAAGCACTGAGTAAGCCCACACGAGACACGACAAGG
TCTGCTGCACCAGAGAGGTCACTCTCCTCCCAAACAGGGTGAACATGTTT
GAAGGAGGACAGAATGTTCGAGTCAGCCTGCAATGATAAAGGTAAGCATT
CAGAAGCCCAGGCTGGGCTGCAGCAAAGGCAGCACCAGGCCCCTCAAGGC
CCGTGTGGGTCCTGTTGCTCCTCAGGATCATCAAGAAGCTGACCACAGCA
GTGGCTCAGTGGTAATTTATCCCCTACCTCACGAAAGCTCTCACCATGTC
TACAATAAAGTACGCACACATCCTTGCTGCTTAATTGTTAATTCTGAAAG
CAAGGCAAAGTGGCTTGCAGGTCCACCATGGATATTTTCGTGACAAAAGG
TCAAGGATAAGAGACCCATCCACTTCTAGTTCCAGCGTACATATAAACTT
GGAATTCTGAGTGGTAGCTGCAAAATATCTTCAAAGACCATATTGTAAGG
CCAGGAATGGTGGCATACACCTTTAGACCCAGCACTCAGGAATGCAGGGC
CAGATAGATCTCTGTGAGTTTGAAGCCACCCTGGCCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_b12.g1 MSMg01no090_b12.g1 CHROMAT_FILE:
MSMg01no090_b12.g1 PHD_FILE: MSMg01no090_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:08 2005
         (289 letters)



>mm_chr7_117401508_117402196
          Length = 689

 Score =  542 bits (280), Expect = e-158
 Identities = 286/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccatctgagcggagacgcagaggcactcaaggaggcaaagcactgagtaagcccacacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 cccatctgagcggagacgcagaggcactcaaggaggcaaagcactgagtaagcccacacg 429

                                                                       
Query: 61  agacacgacaaggtctgctgcaccagagaggtcactctcctcccaaacagggtgaacatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 agacacgacaaggtctgctgcaccagagaggtcactctcctcccaaacagggtgaacatg 369

                                                                       
Query: 121 tttgaaggaggacagaatgttcgagtcagcctgcaatgataaaggtaagcattcagaagc 180
           ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 368 tttaaaggaggacagaatgttcgagtcagcctgcaatgatataggtaagcattcagaagc 309

                                                                       
Query: 181 ccaggctgggctgcagcaaaggcagcaccaggcccctcaaggcccgtgtgggtcctgttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ccaggctgggctgcagcaaaggcagcaccaggcccctcaaggcccgtgtgggtcctgttg 249

                                                           
Query: 241 ctcctcaggatcatcaagaagctgaccacagcagtggctcagtggtaa 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ctcctcaggatcatcaagaagctgaccacagcagtggctcagtggtaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)