BAC Information

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BAC

Clone NameMSMg01-090H02
Chromosome7 (Build37)
Map Location 95,113,762 - 95,114,050
singlet/doubletsinglet
Overlap geneGrm5
Upstream geneEG621430, LOC621477, Nox4, Tyr
Downstream geneCtsc, LOC100039756, Rab38, LOC100039924, LOC666598, EG621562
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090H02.T7 (MSMg01no090_h02.b1)MSMg01-090H02.TJ (MSMg01no090_h02.g1)
ACCAG308673AG308674
length701702
length of high quality
(start - end)
318 (41 - 358)292 (74 - 365)
definitionCHROMAT_FILE: MSMg01no090_h02.b1 PHD_FILE: MSMg01no090_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:36 2005CHROMAT_FILE: MSMg01no090_h02.g1 PHD_FILE: MSMg01no090_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTGTTTAGCTCTGTACCCCATTTTTAATTGAGTTATTTGTGCTGCTTGT
GTCAAACGTCTTTAGTTCTTTAAAAAAGATGGATATTGGTCCTCTGTCAG
ATGTAGGATTGGAAAGATACTTTTCCAATCTGTAGGTTGCTGTTTTGTCC
TATAGACAATGTCCTTTGCCTAGAAGGAAAATTACAACCCAAAAAAACAT
AGGACATAAGTAATTTCATTCCAGTAAAAACAAAACAATGGAAGTACAGC
ACACACACACACATACACACACACACACATACACACACACACACTCACAC
AGACTGCCAACATCAAAATAACAAGAATCAACAATCACTGATCATTAATA
TCTCTCAATATTCATGGACTCAAATATCCAAAAAAAAAAAAAGACACAGG
CTAGCAGAATAGATGTGAAAACAGGATCAATCACTCTGCTGACTATGAGA
AACACACCCTCATAATAAAGATAGACATTATTTCAGAGGATTGGGCTCGA
AAAAAGTTTTCTAAGGACATGGATACAAGCAGCAAGGTGGAGTAGTACCT
CTATAGAACATAGATTTTAACCCAAAATTTATCCAAAGAAAGAGAAAGAC
CCTTCTCCTTCTTCAAAAGAAAAATCTATGAAGATGTTATTCTCATTCTG
G
ACGATATAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTAATCTGTGTAAACATGTACTTCTTT
TCAATATTGAAACATCAACCCAAATAGGTGCTGTTGAAAGGGAATTTGAA
ATTGTAATGAAGATCCCAAGTTAACTGACTCAAATGGAGAGATTGTTCTG
GATGTCTATGGTCTGATCCAATGACCAGTGAAATGGGACCAATTCATCAA
ATAAATTAAAGAGGGCTTTGATAGCAAACTGTTACAGGTAGGTTTGTTTG
ATAAGAAGAGAATAGCATGCAATGAAATGCCAATGGATAGCGGGATTTGA
GAACATATCTGGTTATTAACTGGAAAGACACATAGATATTCAAAGGCTCA
TATAAAAGGAAGTTAGTCAGCCCAGAAAGATTTTTTCTTGAAAGCAGGTG
TTTCATAAATCCTCCCAACAGAAGTGCAACTTGTCTATCATGTAACTCCA
CCATCTTTTGAACCCTGAACAAAGGATGCAATCTTCCATGGGTAGAATTC
TTAAGGTATAAAAAAATACATATAATGTTATACTTCCCAGGCTATAAAAC
CTTAAAAGAATATTCTTTACCAGAACGTAATTTTTTCATCATCTTCCTAC
TTCTATTCTAATTTCCTTTTTTCCGGAAGACCCACCTTGTAAAAATTTGA
CA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_h02.g1 MSMg01no090_h02.g1 CHROMAT_FILE:
MSMg01no090_h02.g1 PHD_FILE: MSMg01no090_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:36 2005
         (292 letters)



>mm_chr7_95113413_95114104
          Length = 692

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaatctgtgtaaacatgtacttcttttcaatattgaaacatcaacccaaataggtgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ttaatctgtgtaaacatgtacttcttttcaatattgaaacatcaacccaaataggtgctg 579

                                                                       
Query: 61  ttgaaagggaatttgaaattgtaatgaagatcccaagttaactgactcaaatggagagat 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 578 ttgaaagggaatttgaaattgtaacgaagatcccaagttaactgactcaaatggagagat 519

                                                                       
Query: 121 tgttctggatgtctatggtctgatccaatgaccagtgaaatgggaccaattcatcaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tgttctggatgtctatggtctgatccaatgaccagtgaaatgggaccaattcatcaaata 459

                                                                       
Query: 181 aattaaagagggctttgatagcaaactgttacaggtaggtttgtttgataagaagagaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aattaaagagggctttgatagcaaactgttacaggtaggtttgtttgataagaagagaat 399

                                                            
Query: 241 agcatgcaatgaaatgccaatggatagcgggatttgagaacatatctgg 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 agcatgcaatgaaatgccaatggatagcgggatttgagaacatatctgg 350


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)