BAC Information

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BAC

Clone NameMSMg01-091I18
Chromosome7 (Build37)
Map Location 142,738,267 - 142,826,642
singlet/doubletdoublet
Overlap genePtpre
Upstream geneLOC668750, Dock1, B830028B13Rik, EG668693, LOC100043254, Foxi2, Clrn3
Downstream geneMki67, LOC668764
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091I18.T7 (MSMg01no091_i18.b1)MSMg01-091I18.TJ (MSMg01no091_i18.g1)
ACCAG309468AG309469
length711714
length of high quality
(start - end)
111 (191 - 301)227 (127 - 353)
definitionCHROMAT_FILE: MSMg01no091_i18.b1 PHD_FILE: MSMg01no091_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:06 2005CHROMAT_FILE: MSMg01no091_i18.g1 PHD_FILE: MSMg01no091_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,826,532 - 142,826,642)(142,738,267 - 142,738,493)
sequence
TTGCGGCCGCTATACACTCCTATCCGAAGAGGATCCGCGGATTCCAGCTT
TCTGACAGAGAGTGCATGTGCCTTCTGCTGTCAGAGAGCTATTCTAAACC
CTTTCTGCCTGACACCTGTGGAGCAGCGGCTGTAGGCTGCAAGTAAAGAG
GCATATGGGGGAGAGGGATGATATGCCAAGAAATGGATGGAAGCTCGATC
ATTTTGGGTTGCACAGTGATTCCGGCCACACCTGAGCTCCTCAAAGAAGG
CTCTAGGCCTTATGTGCATGGATATGCTTTCAAATCCTCCAAATTAACGT
AAAATCTTCTTAACCTAAGCAAGAACCTCTTACAGTGTCTCCACACATAC
ATGCTACCTCCACATGTAGAAATACACTCATCCACAGAAAGCGGGGACCC
AGGTGCTTCTGGCGGTTTTGTTCATAAGAAGATAAAACAAAAAAATTATC
GCAACTAGTGCATTTGAGTTANGCATCAGGAAGGAAGAGGTTACATCNAC
TCTAAATGGTGCGTTAAAAAGGANTACTTACGCACCCCCCTCCTCATGCT
CCGGCGTTGAGCTCCCATAGGATTCTGGCACAGGCTAATTCGTCTGGTCC
CCCATTATTGACTTTCCAGCATCTTTCTTCAGATCCGACTCCTGGAGTTT
CCTGCCCTCTGCCCCTCCCTTTTCTGCACTTGTGCTCTGTACTCCTCCTA
TTCCCCGTTCT
ACGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTAGTACTATGCACACACATGCATTT
ATGACGGCGACTGTCTTATCCATGTCCCAGGTCCTCAGGGATAAGGAAAC
TACCACCCCAAGAGAGGCATAGGGGGGATCCAATGCAGAGGTGGGGCAGG
CTTGGGTGTGAACGTTTTCTTGGCAGCCAACAGCTCTGAAGTATGTCAGA
CAGAGAGATGCTTCTGTAAGCTTGCCTCCCGGCAGGAAGTGGGCTCTCCT
GCCTGGGGAACAGCATGTGTCTAGATGCAGCTAGCTGGAGCAGGGTCAGA
GAGGACTATGAAACGACCGCGCTTTGGGGCTCAGCCATCACAGGAACACA
AGAGTCTGGACCTGCCTGAGGGACCAGTGCCTCCCTTGCAGATTCTGAGG
CACGCTGGCAGCTCCTTCTGTATAGACACGTGATTACGAACTGTTTTTTC
ACAGGCTTGAGAGTCTTGAGTGACTCCTCCCCTATTATGAAACCTGCGAA
TTTTGTCATGAATTTGCTAAGTGAAATGTTTGCCGTGCTTGGCCCCCCAA
TGGTTGACCGCGCCGCCTTATGTTTGCCCTGCGGATTGTACATACAGGAC
CGATCCGACAGCTTATATTGTGCCCTCGACCACATGCTATTTCACCGAAA
ATGAACCTTCCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_i18.b1 MSMg01no091_i18.b1 CHROMAT_FILE:
MSMg01no091_i18.b1 PHD_FILE: MSMg01no091_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:06 2005
         (111 letters)



>mm_chr7_142826332_142826842
          Length = 511

 Score =  207 bits (107), Expect = 2e-58
 Identities = 110/111 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagctcgatcattttgggttgcacagtgattccggccacacctgagctcctcaaagaagg 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aagctcgatcattttgtgttgcacagtgattccggccacacctgagctcctcaaagaagg 252

                                                              
Query: 61  ctctaggccttatgtgcatggatatgctttcaaatcctccaaattaacgta 111
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ctctaggccttatgtgcatggatatgctttcaaatcctccaaattaacgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 111
Length of database: 511
Length adjustment: 8
Effective length of query: 103
Effective length of database: 503
Effective search space:    51809
Effective search space used:    51809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no091_i18.g1 MSMg01no091_i18.g1 CHROMAT_FILE:
MSMg01no091_i18.g1 PHD_FILE: MSMg01no091_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:06 2005
         (227 letters)



>mm_chr7_142738067_142738693
          Length = 627

 Score =  431 bits (223), Expect = e-125
 Identities = 226/227 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaggtcctcagggataaggaaactaccaccccaagagaggcataggggggatccaatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaggtcctcagggataaggaaactaccaccccaagagaggcataggggggatccaatgc 260

                                                                       
Query: 61  agaggtggggcaggcttgggtgtgaacgttttcttggcagccaacagctctgaagtatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaggtggggcaggcttgggtgtgaacgttttcttggcagccaacagctctgaagtatgt 320

                                                                       
Query: 121 cagacagagagatgcttctgtaagcttgcctcccggcaggaagtgggctctcctgcctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagacagagagatgcttctgtaagcttgcctcccggcaggaagtgggctctcctgcctgg 380

                                                          
Query: 181 ggaacagcatgtgtctagatgcagctagctggagcagggtcagagag 227
           ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaacagcaggtgtctagatgcagctagctggagcagggtcagagag 427


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)