Query= MSMg01no092_b10.b1 MSMg01no092_b10.b1 CHROMAT_FILE:
MSMg01no092_b10.b1 PHD_FILE: MSMg01no092_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:49 2005
(311 letters)
>mm_chr7_60827414_60828123
Length = 710
Score = 443 bits (229), Expect = e-129
Identities = 279/303 (92%), Gaps = 17/303 (5%)
Strand = Plus / Minus
Query: 20 ctgatctgggaaa-gaaattacatttcctattttaaattatctcatttagattg----ta 74
||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 636 ctgatctgggaaaggaaattacatttcctattttaaattatctcattcagattgcattt- 578
Query: 75 ccccttctactaacattcaggctagaagtg--ttttttttttctaaaagaaaaa----aa 128
|||||||||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct: 577 ----ttctactaacattcaggctagaagtgttttttttttttctaattgaaaaaagttaa 522
Query: 129 ttatattataacataaagatatgcctttgattttcaaatgggtccattgatatagcctag 188
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ttatattataacataaagatgtgcctttgattttcaaatgggtccattgatatagcctag 462
Query: 189 cattatgtgtttctatattcataattaaaatctttaaaatgtacttgtaatttgaggctc 248
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 461 cattaagtgtttctatattcataattaaaatctttaaaatgtacttgtaatttggggctc 402
Query: 249 agaattttatcctctcatgcagctgtttaatcatgaagatggaaccattttcctgtcttg 308
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 401 agaattttatcctctcatgcagctgttttatcatgaagatggaaccattt-cctgtcttg 343
Query: 309 gag 311
|||
Sbjct: 342 gag 340
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 710
Length adjustment: 9
Effective length of query: 302
Effective length of database: 701
Effective search space: 211702
Effective search space used: 211702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no092_b10.g1 MSMg01no092_b10.g1 CHROMAT_FILE:
MSMg01no092_b10.g1 PHD_FILE: MSMg01no092_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:49 2005
(278 letters)
>mm_chr7_60681897_60682574
Length = 678
Score = 484 bits (250), Expect = e-141
Identities = 271/278 (97%)
Strand = Plus / Plus
Query: 1 atttcaattatttccatttttcaagtttagatgtgcatgctttttaccccaaatgactga 60
|||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||
Sbjct: 201 atttcaattatttccatttttcaagtttagatgtgcatgcaaattacacaaaatgactga 260
Query: 61 gatcattcacagagtcttttccagtggcagattgtgtaaagcagagctttgccactggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatcattcacagagtcttttccagtggcagattgtgtaaagcagagctttgccactggag 320
Query: 121 agttttattttgatttgtaaaattaattagtcatataatttcagttatatgtttattttt 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 agttttattttgatttgtaaaattaattagtcatataatttcagttgtatgtttattttt 380
Query: 181 cgtgcttcaataattgctgcacactgaaaaattcaaaatttcttccttaacatattcaca 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgtgcttcagtaattgctgcacactgaaaaattcaaaatttcttccttaacatattcaca 440
Query: 241 cagtgtataaatgtgacctattaatcaccagcacccag 278
||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtgtataaatgtgacctattaatcaccagcacccag 478
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space: 179961
Effective search space used: 179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
