BAC Information

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BAC

Clone NameMSMg01-092J07
Chromosome7 (Build37)
Map Location 102,470,192 - 102,470,418
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666816, LOC100040132
Downstream geneLOC666823, Frda-ps, EG666836, Odz4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092J07.T7 (MSMg01no092_j07.b1)MSMg01-092J07.TJ (MSMg01no092_j07.g1)
ACCAG310235AG310236
length713707
length of high quality
(start - end)
229 (132 - 360)301 (76 - 376)
definitionCHROMAT_FILE: MSMg01no092_j07.b1 PHD_FILE: MSMg01no092_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:29 2005CHROMAT_FILE: MSMg01no092_j07.g1 PHD_FILE: MSMg01no092_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTATTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTAACTGAGGACTATCAAACAGCCAAGAAGCACCTAAAGAAA
ATTTCAACATCCTTAGTCATCTTGTACCCGCAAATAAAATTAAAGCTTTG
TCTTAAAGAAAAGAAGAATACAATATTAGGAGGGTGAAGGTCTGGATCCC
TGTTTCTCTTGCTCCACTGCTTCTTTGAGGGACCCTCACCATCCCAGGAA
AAAGTCTTTTCTGAGCTATGTCTTTCTCTGGTGCTGTTGAGCTGTGTGTC
TGCCTCACTGCTGGGATGCTGGAGTGCTACCAGCATGTCGCTCAGGGAAG
ACAGAACACAGCCTATTTTTTGTGTCCTACCCCCTGCTCCCCAGGTGAGA
AACAGCCAGGTCTGTGATGGCCATTGTAAGAAAAAATCACCTGTGTAACC
GACGCCTCTGTGGACTGAGAGAGGAGTTGATAATGGTGGTCTATGTCTCC
CCCATGTACCACGCAGGACGGAGATTGCTGATCCCTGCTCTCGGCATAAT
CTGTCTTGTCTCCCAGTGAGTGTCCTAAGCATGTACAGGCTTAAAACAAT
TACGCCCTCTCCGGTAAATTTTAGGCTCAGCCCTTTACAAGGAACCCCAA
ACCCCCCTCGAAGAAAGAATAGGTCCTTTGCCTTGCCTCCCCTGCTTCTT
CTTTATGGCCATA
CCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAACTTTTATCATG
AATGGGTGTTGGATCTTGTCTAACGCTTTTTCTGCATCTAACGAGATGAT
CATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGG
ATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGG
TCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAAT
TTTATTGAGGATTTTTGCATTGATATTCATAAGAGAAATTCGTCTGAAGT
TCTCTATCTTTGTTTGGTCTTTCTGCGCCTTAGGTATCAGAGTAATAGTG
GCTTCATAAAATGAGTTGCGTAGAGTACCTTCTACTTCTATTTTGTGAAA
TAGTTTTGTGCACAACCGGAATTAAATCTTCTTTGAAGGTCTGATAGAAC
TCTGCACTAAACCCGTCTGGTCCTGGGCTTTTTTTTGGCTTCTTTTTGCT
TCCATTTCTTTAGGTGATATGTGACTGTTTAGATGGTCAACTTGATTCCT
GACCCAATTTTGGTACCTGGTAACCTGCCCAAAAATTTGCCCCTTTCCTT
CCGGTTTTTCCAGTTATGGTGACCAAACCCCTTTTGAACAAGGATTGAAT
GGCCGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_j07.b1 MSMg01no092_j07.b1 CHROMAT_FILE:
MSMg01no092_j07.b1 PHD_FILE: MSMg01no092_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:29 2005
         (229 letters)



>mm_chr7_102469992_102470618
          Length = 627

 Score =  408 bits (211), Expect = e-118
 Identities = 224/229 (97%), Gaps = 2/229 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaataaaattaaagctttgtcttaaagaaaagaagaatacaatattaggagggtgaaggt 60
           |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 201 aaataaaattaaagctttgtcttaaagaaaagaagaatacgatattaggtgggtgaaggt 260

                                                                       
Query: 61  ctggatccctgtttctcttgctccactgcttctttgagggaccctcaccatcccaggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggatccctgtttctcttgctccactgcttctttgagggaccctcaccatcccaggaaa 320

                                                                       
Query: 121 aagtcttttctgagctatgtctttctctggtgctgttgagctgtgtgtctgcctcactgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 321 aagtcttttctgagctatgtctttctctggtgctgttgagctgtgt--ctgcctcactgc 378

                                                            
Query: 181 tgggatgctggagtgctaccagcatgtcgctcagggaagacagaacaca 229
           ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 379 tgggatgctggagtgctaccagcatgtcgctcacggaagacagaacaca 427


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 627
Length adjustment: 9
Effective length of query: 220
Effective length of database: 618
Effective search space:   135960
Effective search space used:   135960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)