BAC Information

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BAC

Clone NameMSMg01-093M20
Chromosome7 (Build37)
Map Location 104,418,272 - 104,418,624
singlet/doubletsinglet
Overlap geneGab2
Upstream geneOdz4, LOC670727, LOC666858, Nars2
Downstream geneLOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093M20.T7 (MSMg01no093_m20.b1)MSMg01-093M20.TJ (MSMg01no093_m20.g1)
ACCAG311145AG311146
length1,3071,215
length of high quality
(start - end)
---354 (79 - 432)
definitionCHROMAT_FILE: MSMg01no093_m20.b1 PHD_FILE: MSMg01no093_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:48:57 2005CHROMAT_FILE: MSMg01no093_m20.g1 PHD_FILE: MSMg01no093_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:48:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGGT
ATCATTCCCACCCTTAAGAAGCTGTTTAGGNCAAAGATGAAAGGACACAC
CCCCCTTAAGAGGACAAGCCGCCCTCATAGGCAGTCTTCCCACCCGTGTT
CCACGAATCTCTTTTCCCTGTCTATACCCCGCCATTTCATCTGCCGAAGC
TCCCAGGATAGCCTTTACCATCTCATAGTTTCAGCCCTTGAATAAACCCT
GACTTCCTTCTCACCACGACCTTGTCTCACAGTATTGGCTTCTGATAGCT
GAACTCGCTCATTCTTGTATTTTAATCATCTCAATCATCAGACTTGCTGG
TGTCCGCCTGCTATCCCAGTATCTCGGAAGCGGAAGATTACTTTTTTTTA
CCAGCTGTTTTCATGGCTAGTTCCTCTGTTTAATATTATTCCCTCTTTTC
TTTTTTCCCCCCCCTCGTTTGTATTTTCACTATTAATCAAAGATGCTATT
TTTTGTATTTGTCTCTTCTTTTTGCTTCTTCTGTTTATTTCTTTTCTTTT
CATCTTTGTCTATTATATTCTTTTTCTTCTTCTTTCTTTTTTACCTTCCT
CTCTTTTCTTCTCTTTTCTATTTCTTCTATTCTTACTTCTTTCTTATTAC
TTACTTTTCTCTCTTTTTCTTTTTTTTTTTCTTCTTTTTTTCTTTATTCT
TCTTCTTTTTTATTTCTTTCTTTCTTTTTCATTTTTTTTTTTCTTTCTTA
TTTCTTTTCTTTTTTCTCTCCTTTTTATTATTCTATTCTTCTATCCTTTA
TTCTTTTCATTTTTCTTACTTTTTATTTTTTTTATCTTTTATCTTTATCT
TCCTTCTTCCCTATTTTTTTTTTTCTTTTTTTTTTTTTTTTATTCTTTCT
TTTTCTTTTACTACTTCTTTTATTTTTTTTTTTTTCCTTATCTCCTTTAC
TTTTCCTTTTTTTTTTTCTTCATTTTTTATCTTTTTTTTTTTTCTTTTCT
TCTCTTTTATATATTCCTTTTCTTATTTTCACTTTCTTCTTTCTTTTCTT
TTCTTCCTTCTTTTTTTTACTTTTTTCTTTTTGTTCTTTTATTTTTATAT
TTTTACTTATTTTTGTTTTTTCTATCTATCTTTGTTTCTATTTTTCTCCT
CCTCTTTTCTTTTTATCTTTTTATCTTTTATATTTTTTCTTTTCTTCCTT
AATATCTTTTTTTTCTTTCTTTTATTTTTTCTTTATCTTTATTTCTNTCC
TCTCTTTTCTTTTTTCTCTCTCCTTTATTCCCATTTCCTTTCTATTTATT
CATTTAT
CCATTGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCCCCTTAATTTGAAGATCATACAGCTATCATGGAACAGTTT
CCCTCTAGAGACTCATTGACTTTCTCTCTTCTGTCCTTTCCAGTGCTAGG
AGTGACTAGATTGTAATTAGTACTGTACATCATGAATAAGCTGGTAATCC
TGCCTCGGGCCATGTGGATAGTACAGCCTGAAATAGGTCAGAAAACAGTA
GCTAAAGAACCTTATCTCTTCTGATAGGATTTGAATGACTCTAGAAAGCC
ATCATCTCCCAAAATATTCCTCCCTACCTAGCATATTATCTGACCTTATA
TCTTTATACCTTTATTTCTTGAGAATATAAGCTTCATGTTTTTAATTTTA
AAATGTCACATGTTTTATTTATGTAATCATGCACTAAGAACCCCTTCATG
TGCCACTATATTAGGTACATGCTAGGACTGTGTAGTAATAATCCCACTGA
CCCGTTTCTCCGAAACCTTGTGCAATGAAGCATAATGACCATAGGTCTAA
ACAAAGTATAATCTGACTCTCTGTCTCTTCCTTTATCGCTATATAAGCAT
TCATATTGGTATTCGTGTTAATGCATTATCTGCTTAGTACTCTGAATTCT
TTCTTTTGCCCTCGCTATAATAAGATAATCTCATCCTTTCTCTTCGTTTA
TTATATTGTTAATACATTCCTTTATTTATTCCTCATCTTCTATTTATTCT
CCTATGTTCAACGTCTTGATGTAGTCTTCATTTGTTTTTGTTCTATGTTG
CGTAATTCCTGTTTTTATTTTTTCTTTTCTTTTTTATTTTTGTTTTTTTT
TTTCTAATTTTCATTCTTTATTATTATTTTTTTTTGTTTTTTTTTTTCTT
TTTCTCTTATATCTTTTTACTTTTTCCTTTTTTTTTTTTCCCTTTTTTTT
TTATTACTATCTCTTCTTTTTTTTTATTTTTTTCTTTCTTCCATATCTTT
TTCTTTTCTTCTATTTTATCTTTTTTTTTTGTATTTTACTATCATTTTCT
TATTATTCACTCACTTTCATCTTCTTTTTTTCCAATTCTGTATTTTTCAT
ATTTTTTTTTTTCTACTTTTTCCTCCTTTTCCATTCTTTTTCTTCTTAAT
TATCTTACATTTCTCATATTCTTACCTCTCCGTAATTTATTTCTACACCT
TTCTATCTTTGTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_m20.g1 MSMg01no093_m20.g1 CHROMAT_FILE:
MSMg01no093_m20.g1 PHD_FILE: MSMg01no093_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:48:57 2005
         (354 letters)



>mm_chr7_104418072_104418825
          Length = 754

 Score =  615 bits (318), Expect = e-180
 Identities = 345/354 (97%), Gaps = 2/354 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacagctatcatggaacagtttc-cctctagagactcattgactttctctcttctgtcct 59
           ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 201 tacagctatcatggaacagtttctcc-ctagagactcattgactttctctcttctgtcct 259

                                                                       
Query: 60  ttccagtgctaggagtgactagattgtaattagtactgtacatcatgaataagctggtaa 119
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttccagtgctaggagtgactagagtgtaattagtactgtacatcatgaataagctggtaa 319

                                                                       
Query: 120 tcctgcctcgggccatgtggatagtacagcctgaaataggtcagaaaacagtagctaaag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcctgcctcgggccatgtggatagtacagcctgaaataggtcagaaaacagtagctaaag 379

                                                                       
Query: 180 aaccttatctcttctgataggatttgaatgactctagaaagccatcatctcccaaaatat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaccttatctcttctgataggatttgaatgactctagaaagccatcatctcccaaaatat 439

                                                                       
Query: 240 tcctccctacctagcatattatctgaccttatatctttatacctttatttcttgagaata 299
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 440 tcctccctacctagcatattatctgaacttatatctttatacctttatttcttgagaata 499

                                                                 
Query: 300 taagcttcatgtttttaattttaaaatgtcacatgttttatttatgtaatcatg 353
           |||| |||||| ||  ||||||||||||||| ||||||||||||||||||||||
Sbjct: 500 taagtttcatggttggaattttaaaatgtcaaatgttttatttatgtaatcatg 553


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)