BAC Information

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BAC

Clone NameMSMg01-093O21
Chromosome7 (Build37)
Map Location 95,026,996 - 95,027,322
singlet/doubletsinglet
Overlap geneGrm5
Upstream geneVmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4, Tyr
Downstream geneCtsc, LOC100039756, Rab38, LOC100039924, LOC666598, EG621562
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093O21.T7 (MSMg01no093_o21.b1)MSMg01-093O21.TJ (MSMg01no093_o21.g1)
ACCAG311240AG311241
length1,2021,228
length of high quality
(start - end)
101 (62 - 162)328 (118 - 445)
definitionCHROMAT_FILE: MSMg01no093_o21.b1 PHD_FILE: MSMg01no093_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:16 2005CHROMAT_FILE: MSMg01no093_o21.g1 PHD_FILE: MSMg01no093_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACCCCCTAAAAAACCCNGAGNGGAANAGAAANGGAAGGACAGGCCCCTT
AAAAACTCTNCCCCCTAGNTATCCATCCCATCGGCAGACCCCAGACCCAG
ACACTATTGCAGATGCCCCCCCTACTTACTGACAGGAGCTCAGGATAGCT
GTACTTCTGAGAGTCTCTGCCAGAGCTGAACCAATACAGATGTGGATATA
CCCAGCCCAACATTGGAATGAGCACAGAGACCCCTCTCGCGAACTTAGGT
CTAGGACTGTATTTTTTTGAAGGGTTTTGCCTCCTCTTATGATTAACTTC
TATATCTTTCATTCAGACACCTCCCCCGCTCCTTTTTTTTTTTCCACCAA
CCAAAGCGCAGACAGTGGGTACCTCTGATTCCCCCCTCCTTTTTTTTTCC
CCCCCGTTTTATNTCTGTTTTCTTGTAAAAAAAAAATGGTTGTTCTTTTG
TCTTTTCTTTGTTTTACCTTTATTTTTTTTTTTTTCTTTCTTTTTGTTTT
CTCTCTTTTTCTTTTCTTTTCTTTTTTTTTTTCCTTCTTTTGCATTTTTT
TTTTCTTTCCTTTTTTTTTGCTTCTTTTTTTTTTTTCTTTCTTTCTTTTT
TTTTTTTTTTTCTTTCCTTCTTTTTCTTTTTTTTTTCTTTTATTTCTCTT
TTTTTTTTCTTTATTTCTTATTTTCTTTATCTTTTTCTTTATTTTTTTCC
TTTTTTTTTATTTCTTCTTTTTTTTTTTTTTCCTTTTTTTTCTTCTTTCT
TCTTTTTTTCTCTTTTTTTTTTTTACTTTTCATTTCTCATTTTTCTTTTT
TCTTTTTTTCTTTCTTATCCTTTTTTTTTCTTCCTTAGTTTTCATTTTCT
CTTTCTTTTTCCATTCTTTTCTTTTTTCTTTTTCTCTCTATCTTTTCTTT
CTTCTTCTTTTTTCTTTCTTATCTCTTTTTCTTCTTTCTTCTTTTTTCTC
TCCTTTTATTTTATCTTTTTTTTTTATTTCTCTTTCTCTTTAATTATTAT
TTACCCTTTTATCCTCTTTTTTACTTTTTTCTCTTACTTTCTTCTTTTCT
GCTCTTCTTCTCTTCTTTTTATTACCTCCTCTTTCATTTAGTTCTTCCTT
TGTTATGTCTTCTATTCTATTCGTTTTTTCATTTTACTTTACCTTTCTCC
CTTTTGTTATTTGGTTCTTTATTTCGTTATTTTATCCTATTTTCTTCTTT
TA
TTCTACGAGTGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTTTAAAAGTGATGTTGAAATATTATATTAGGA
TCCCCCTCTTTAAAGTGTTTTCATTCCGCTGTGCTAACATGGTTATTAGT
AGTGCTTTTAGAGGTGAAAATAGTCACTCTAGCCAAGCTATGTCAGAATG
ATCTACTCGTTTTTCAGAAGAGAATGGGTCAAATACTTCTGGATATTTAT
TTAAACACTATCTTATAAAAATTATTTTTCTATATTTCCCAGAGTATTCC
TATGATTGAGGTAGCACCTGGGAAATACAAAGATAGAGAAAGAAAAAGGT
TGTACAATTAAAGAAATGCCGTTGGAACCCAGGGCTTCATTAATGTTTTT
TAATTACTCTACTATCTGATCTGTACCCTTAGCCCTCTTAACAGCATTCT
TATATATCCCATTTATTGATAACAATTTTACTCAATAACATTTAAAATGT
ATTTTTACAATAATAATACTCATCTTACCTCCACTTAACAAAACTTGCTA
TGAGGAAAGTCCTCTGGACGTATTTTATTTTAATTGATAGTTCTGTAACA
CGTATCTGGCTTACATATGGTTAAAATATACTAGTCTACGTATAATTCTT
TCTCTACCTTTTTTCTATCGTTTAAATTATCCTCTTGTTTGATTGAATTT
CTAATGTATTTGTTCTTTATTTTTTATTCTTGTATTCTCTGACTTATTAC
ATTTCATTATTTTTATGATTCCTTTTTTTATTTTTATCTTCTATCTTTCT
TTCTTATCATATGTTATTTCCTTTTTTTATTCAATTGTTATCTCTTTCTT
TCTTTTTGTTCTTGACTTCTTTTTTTTTTTTTTTTTAATTTTTCTTTTTC
CTTTATTTTTTTTTTTTTTATTCTTTCTATATTTTTTTAATTCTTTTTAT
TTCTCTTATCAATTTTTATCCTTCTTATTTTCTATTATACCCTCATCTCT
TCTGTTTCCGTCTATTCTCTATTATTTTTTCTGTTTTTTTTTTTTATTTT
TTTCTCTTNATCTTTTTATTTGTTTTTTATTTTTCTAATCTCTCTTTTTT
ATTCTTTANTTTTCTATCTTTTGTCTTTCTATTCTTTGCTTTTTTTTCTT
TCTTCTTCTTATATCTTTTTTTCTTATTTTGCTTCTTTTTTCTCTTCTTC
TCTCATTTNCTTTTTTTATATATTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_o21.g1 MSMg01no093_o21.g1 CHROMAT_FILE:
MSMg01no093_o21.g1 PHD_FILE: MSMg01no093_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:16 2005
         (328 letters)



>mm_chr7_95026796_95027523
          Length = 728

 Score =  547 bits (283), Expect = e-160
 Identities = 316/331 (95%), Gaps = 8/331 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttcattccgctgtgctaacatggttattagtagtgcttttagaggtgaaaatagtcac 60
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ttttcattctgttgtgctaacatggttattagtagtgcttttagaggtgaaaatagtcac 468

                                                                       
Query: 61  tctagccaagctatgtcagaatgatctactcgtttttcagaagagaatgggtcaaatact 120
           ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 467 tctggccaagctatgtcagaatgatctactcgttttttagaagagaatgggtcaaatact 408

                                                                       
Query: 121 tctggatatttatttaaacactatcttataaaaattatttttctatatttcccagagtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tctggatatttatttaaacactatcttataaaaattatttttctatatttcccagagtat 348

                                                                       
Query: 181 tcctatgattgaggtagcacctgggaaatacaaagatagagaaagaaaaaggttgtacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tcctatgattgaggtagcacctgggaaatacaaagatagagaaagaaaaaggttgtacaa 288

                                                                       
Query: 241 ttaaagaaatgccgttggaacccagggcttcattaatgtttttta----attactctact 296
           |||||||||||| ||||||||||||| |||||||||||||    |    |||||||||||
Sbjct: 287 ttaaagaaatgcagttggaacccaggacttcattaatgtt----acagaattactctact 232

                                          
Query: 297 atctgatctgtacccttagccctcttaacag 327
           || ||||||||||||||||||||||||||||
Sbjct: 231 atttgatctgtacccttagccctcttaacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)