BAC Information

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BAC

Clone NameMSMg01-094D15
Chromosome7 (Build37)
Map Location 132,448,354 - 132,448,660
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628779, EG545999, LOC670828
Downstream gene4933440M02Rik, LOC100043014, Jmjd5, Nsmce1, EG244214, Il4ra, Il21r, Gtf3c1, D430042O09Rik, Gsg1l, Xpo6, Sbk1, LOC100043495
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094D15.T7 (MSMg01no094_d15.b1)MSMg01-094D15.TJ (MSMg01no094_d15.g1)
ACCAG311453AG311454
length767761
length of high quality
(start - end)
311 (106 - 416)194 (178 - 371)
definitionCHROMAT_FILE: MSMg01no094_d15.b1 PHD_FILE: MSMg01no094_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:47 2005CHROMAT_FILE: MSMg01no094_d15.g1 PHD_FILE: MSMg01no094_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNCCCCNNNNNNNNNNNNNCCCCNTTTTCCCCCNCNTCNNNNCCCG
CTTNNNNNNACATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCTGTGGAGCGAGAGCTCAGAGCGGGGCCTTGTATA
GCGACAGCTGTCCGTAAGGTCTTTGGTGTCTCCTGAGGCTTCCTCTCACC
CAACATGGGAACTCCGTCTTCTCTTTGGCACTAGCACTTTTTAATATTGT
AAGGATGGACCCTGGATTCCAAGTCTTATCTTCCCTTCTGTGATGAGATC
CAGGTAGTAGCTGTTTGAGTTCATTGTTCTGAAGAGAGCAATGGCCTTTC
AAATACAGGCATATTCTAGCCCCAGCGGCTATGTGAGCATATATTGCAAA
GGAGACTTTGTTGATGATTTTATTTGACCCCCCCCCCCCGAGGTGATCCT
GATCCAGTCACCCCAGGGGTACTGACGTAATCAAAAAGAACCCTATAAGA
GGGATACTGAGGTGAAGCACATGTGTAAAGGGAGAGTCATGAGGCTAGTT
TTTGATGCTGCAGCAAGGAATGCAGGCCATCCTGTATGAGCTGCCTAAGG
CAAGGAAACATGTTTTCTCCAAGATTTCCACATCTTTCTTGAGCCCCTGT
GTTGAGCGAAACTTGAAATAACCTCCTTTACAGATCCCATGCATTCCACC
TACAAAGATGGTTAAGGCCAACTAACAGAAGTCCTCTGAATCAACATGTA
CCTTGCGTTCTGCCCCG
NNCCCCNNNNNNNNNNNNCCTTCCCTTTCTCTCTTTTCCCCCCCCTCTTT
TAACTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCAGATCCATGGGACAACTGAGTT
ATGAACTGGGAATGGAATGAGACCATAGAGAAAAGAACTTACAAGCACAG
CCTGTCAATAAGAAAGCTTATGGCTAAAAAGCTGAGGCAGGAAACAGGAG
GTAGGACATCGGTGGGGATAGAGAGAATTCTGGGAAATAGTCAGAGGTGA
GGGAGATCCTTACTGGAACACTGAGGAGAGGGGTGTAAGACGAGGAGAGT
AAACCAGCTAACTTGAGTTAGATTAAAAGGGATAATAAATTAAGAGCTAG
CTGGAAAACTAACCAAAGCTTATGATCTTGGCATTTATTAATAAATAATT
AGTCTCAGGGCCCTTATGAGAACTGACTGATTACGAAGAAAAACTAGATT
TTACAGGAGAGTGTACCCACCCATTGTGCATGAGAGAAACCCCACGGGAG
CCTCCAACAGACTACCACCCTTGCCGCTTTAAGGAAAGAATATCGAAACG
TCTTCTTGGAGTAATGTGACCCACAACTGGTTTCCCATTTGAACTTTCTT
ACCTCCTCATCTTGCGCCCCCCCATTGTCTCTAGTCTGCGCCCATTGCTC
TATTTGCGTTCACCGCTGTGCCTGCATGATTTGTTTTGCCCCTGTCAACC
GCTTTTGTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_d15.b1 MSMg01no094_d15.b1 CHROMAT_FILE:
MSMg01no094_d15.b1 PHD_FILE: MSMg01no094_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:47 2005
         (311 letters)



>mm_chr7_132448150_132448860
          Length = 711

 Score =  571 bits (295), Expect = e-167
 Identities = 304/307 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgtggagcgagagctcagagcggggccttgtatagcgacagctgtccgtaagg 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gaattcctgtggagtgagagctcagagcggggccttgtatagcgacagctgtccgtaagg 452

                                                                       
Query: 65  tctttggtgtctcctgaggcttcctctcacccaacatgggaactccgtcttctctttggc 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tctttggtgtcttctgaggcttcctctcacccaacatgggaactccgtcttctctttggc 392

                                                                       
Query: 125 actagcactttttaatattgtaaggatggaccctggattccaagtcttatcttcccttct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 actagcactttttaatattgtaaggatggaccctggattccaagtcttatcttcccttct 332

                                                                       
Query: 185 gtgatgagatccaggtagtagctgtttgagttcattgttctgaagagagcaatggccttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gtgatgagatccaggtagtagctgtttgagttcattgttctgaagagagcaatggccttt 272

                                                                       
Query: 245 caaatacaggcatattctagccccagcggctatgtgagcatatattgcaaaggagacttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 caaatacaggcatattctagccccagcggctatgtgagcatatattgcaaaggagacttt 212

                  
Query: 305 gttgatg 311
           || ||||
Sbjct: 211 gtcgatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)