BAC Information

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BAC

Clone NameMSMg01-094M05
Chromosome7 (Build37)
Map Location 19,928,874 - 19,929,241
singlet/doubletsinglet
Overlap genenone
Upstream genePsg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik
Downstream geneErcc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094M05.T7 (MSMg01no094_m05.b1)MSMg01-094M05.TJ (MSMg01no094_m05.g1)
ACCAG311843AG311844
length650803
length of high quality
(start - end)		507 (95 - 601)51 (55 - 105)
definitionCHROMAT_FILE: MSMg01no094_m05.b1 PHD_FILE: MSMg01no094_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:33 2005CHROMAT_FILE: MSMg01no094_m05.g1 PHD_FILE: MSMg01no094_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATTCCGAGAGATCCGCGGATTCTAGGCATTCACCTACTATTGAGC
CATGGCCCCAGGCCTTTGGAAGTGTGAACAAAACAGAACTATCAATAGTA
GCCAGGCGAAATGGCTCACACATTTAATCCCAACACTCGGGAGGCAGAGA
CAGGCGGATCTCGGTGAGTTCGAGGACAGCATGACCTACAGAGTGATTTC
CAGGTCAGCCAGAGCTACAAAATAAGATCCTGACTCAAAACTAGTTAATT
TATCAAATTTAATAGTAAGTAACCCTTGATCCTAGGAAGGAAAGGGGTTG
AGCTGCCAAGGAATCAGAGTGCCGTGCATATTTCTTGCCACCACACGGCG
CGCCTGAACCGTGTGTGCTGTGAAGGAGGCGCTGACAGAGGCAAGTTCTC
ACTGAATGCCTTAGTTTCTCTACCTGGAATCATTTGCTGAGGTTAAAAGG
GTGCAGTAAACCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGG
AGGCAGATGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAG
TGAGTTCCAGGACAGTCAGGGCTACACAGGGAAACCCTGTCTCGAAAAAC
CTATTAAAAAACAAAACACATTAAGGGTGCAGTAAGCCCGCAGTGAGTGG


XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCACAGTCCTGCTGGGTGGTGTGGGTGTAGAGGTCAGGGGTGGGGGT
GCCCCCTATCATTCTCCTTCGAAGTATTTATCAATATTTAAATTGAATGG
ATATATTAGTTTGTGATGTTTTGTGTAAAATAGAAAAGATAAAGTGTNAA
ATGAAAAAACATGGGGTAAAATTTTGCGTTATTTATTATAACTGTTTAGA
GTTCTGTGTGTTATAACGAAATGGTTTTCGCTTTATAAAAACATAGACAC
ATCCATATCCTTTTTTCTATTGCAATTCTCTTCCACCTTACCACCCCCTA
TTAATAATCCATAACATCCCCACTCGTTTGGTTTAGAGCTTACCTCGTTG
TCATTGTTCCTCTCGTTTCCCCTTTCTACCACCCGATTTCTTTACCGCCG
CTTATTTTTTCTTTATTTTAATACCCCATAATAGCAATTAATCACTATCA
CTCTGTTCATTTTTATATCCCTATAATCCTACTATTCCACTATCACACGA
CATTGCCGCCCTCCCATTAAATTCACATCTAGTTCTGTTATACGCCTATT
CGTCTTCTGGCGAGATAAGTGTGCGTGGGTTTCGCCGTTTTGAACATATC
CAGTTCATAATATCTCGACGCATTTTTTAGCTGTGGCTTCTGTTCTTTGC
TGGCTCGAGCTTATCTCAGGTAGGGGGCCCTTTACGTCGCCGCTTTTGTC
TCTTAGGACGACCCGTTTGTGCCCGCGCCATTGTTTCACTTTTTCACGCC
CGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_m05.b1 MSMg01no094_m05.b1 CHROMAT_FILE:
MSMg01no094_m05.b1 PHD_FILE: MSMg01no094_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:33 2005
         (507 letters)



>mm_chr7_19928534_19929440
          Length = 907

 Score =  603 bits (312), Expect = e-177
 Identities = 355/370 (95%), Gaps = 3/370 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagtagccaggcgaaatggctcacacatttaatcccaacactcgggaggcagagacagg 60
           |||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||
Sbjct: 708 atagtagccaggcgaaatggctcacacatttaatcccaacacac--gaggcagagacagg 651

                                                                       
Query: 61  cggatctcggtgagttcgaggacagcatgacctacagagtgatttccaggtcagccagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 cggatctcggtgagttcgaggacagcatgacctacagagtgatttccaggtcagccagag 591

                                                                       
Query: 121 ctacaaaataagatcctgactcaaaactagttaatttatcaaatttaatagtaagtaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ctacaaaataagatcctgactcaaaactagttaatttatcaaatttaatagtaagtaacc 531

                                                                       
Query: 181 cttgatcctaggaaggaaaggggttgagctgccaaggaatcagagtgccgtgcatatttc 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 530 gttgatcctaggaaggaaaggggttgagctgccaaggaatcagagtgccgtgcataagcc 471

                                                                       
Query: 241 ttgccaccacacggcgcgcctgaaccgtgtgtgctgtgaaggaggcgctgacagaggcaa 300
           ||||||  | | |||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 470 ttgccattagagggcgcgcctgaaccgtgtgttctgtgaaggaagcgctgacagaggcaa 411

                                                                       
Query: 301 gttctcactgaatgccttagtttctctacctggaatcatttgctgaggttaaaagggtgc 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gttcccactgaatgccttagtttctctacctggaatcatttgctgaggttaaaagggtgc 351

                     
Query: 361 agtaa-accg 369
           ||||| ||||
Sbjct: 350 agtaagaccg 341


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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