BAC Information

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BAC

Clone NameMSMg01-095H12
Chromosome7 (Build37)
Map Location 28,569,800 - 28,570,088
singlet/doubletsinglet
Overlap genenone
Upstream geneCyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229
Downstream geneLOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095H12.T7 (MSMg01no095_h12.b1)MSMg01-095H12.TJ (MSMg01no095_h12.g1)
ACCAG312374AG312375
length900696
length of high quality
(start - end)
103 (104 - 206)289 (55 - 343)
definitionCHROMAT_FILE: MSMg01no095_h12.b1 PHD_FILE: MSMg01no095_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:30 2005CHROMAT_FILE: MSMg01no095_h12.g1 PHD_FILE: MSMg01no095_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTNTTTTTTTCTTT
TCNNNNTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAG
GATCCGCGGAATTCCAGGTAATATGCGTTCCTAGGTAATGGGAGCTGACA
CTTAGGAATGGGGATGGGCTAGGAGGGGTGTGTCCAGGGATTGTGGTTAT
TTGAATATGTTTGTCCCACCGAATGATACTATTATGAGCTGTATTCTTGT
GTGTTTGATGAGTATTATTTTGTTCTTTGTTTGTTTCTCTTTTTTATCTG
AATCACATATAATACTCTGTTTTTTGCTATTAACACTTACACCCCGATTT
TTTTTTCTATGCTAATAAATAATTATTAGTATGCAAAGCTTTTTTTTTTT
TTTATATACTCCTATTTCTACATTCCATTATTTTTTTTTTTCTCCCCCCC
CCCCCCCTCTTGTTGTGTTTCTTTTCCTTTTTCATCTCTTTTCTTCCCCC
TCTCTTACATCAAATAAATTATATATTTATACCATGCCTTCTTTTCTCAT
TTTTCTCTCTCTTACTTCTCTTTTCTTTTTTATTTTTTCATGCTCTTTCC
TTTTAACATCTTATTATATTTATATTCCTTTTATATTTTTTATTGCTTTC
TGTTCCTATCTAGTTCTTCTCTCTTTTAGTTTTCCTCCTCTGTTCATTTT
TAATTGTCCCCTCTCTTCTCGGTACTCTTCCCCCTCTCCTTATCTCCTCC
TTCCTTTATTTTTTTACATTCTCCCCCACCTATTCTTTTTATTTTTTCTT
ACTTCTCTATTTTTTTCTTACTCTTTTATTTCTCCTCTTTCTTCCTCCTT
GCTTTGACTCTCTACTTTTCTCTTTTTCTTTATTACTCCCTATTTATCTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCCCTGCAGAGTAGACGTAACTTGACCTCACAGAGGTTTGTCTAGG
ATTAAAGGAATACCCAACACCAGCACACCTGCCTCCGTCCTTTAAAAATA
AATCTTTATTTTTACATTTAATTGTTTGTATGTATGCTTATGTGTATGGT
CTCTGCACATGAGTACAGATTCCAGATGATGGTGTTCTATCTCCTGGAGT
TGAAGTTACAGGCAGTTGTGAGTCATTCAGTTCGGTGCTAGGAACCATAC
TTTCTTTCTTTGTTTGTTTCTTTCTCTCTAGACAGGTTTTACCTTGTAGT
TCACCCTGCCCTTGAACTCCTGGTCCTCCTGCCTCAATATTTCCAGATCT
GAGATGCTGATATTGCAGGGCCTTCCAGACTCACTAACTGTGCTTCTATT
ATCATGCATAGTATGTACATATAGAGAGTATAACTTTGTGTGTGAATTCT
CATGTATTCTGTTCACTTTTAATAGGCTTCCATGTGTTTTCTTATATTTT
TATAATTAGTATTACTATTGTTTAATTATAATTTGAACTCTTTCTAACAC
TTATTTATCTTACCCATATATTGTTTCTAAAATCCTTATTCTCTCTCCTT
GTTCTTGATATTCGAAATAGTTTACTGATTCTTCACTTTCTTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_h12.g1 MSMg01no095_h12.g1 CHROMAT_FILE:
MSMg01no095_h12.g1 PHD_FILE: MSMg01no095_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:30 2005
         (289 letters)



>mm_chr7_28569600_28570288
          Length = 689

 Score =  528 bits (273), Expect = e-154
 Identities = 285/289 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccctgcagagtagacgtaacttgacctcacagaggtttgtctaggattaaaggaatacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccctgcagagtagacgtaacttgacctcacagaggtttgtctaggattaaaggaatacc 260

                                                                       
Query: 61  caacaccagcacacctgcctccgtcctttaaaaataaatctttatttttacatttaattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caacaccagcacacctgcctccgtcctttaaaaataaatctttatttttacatttaattg 320

                                                                       
Query: 121 tttgtatgtatgcttatgtgtatggtctctgcacatgagtacagattccagatgatggtg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 tttgtatgtatgcttatgtgtatggtctctgcacatgagtacagattccagaagatggtg 380

                                                                       
Query: 181 ttctatctcctggagttgaagttacaggcagttgtgagtcattcagttcggtgctaggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctatctcctggagttgaagttacaggcagttgtgagtcattcagttcggtgctaggaa 440

                                                            
Query: 241 ccatactttctttctttgtttgtttctttctctctagacaggttttacc 289
           ||||||||| ||| ||||||||||| |||||||||||||||||||||||
Sbjct: 441 ccatactttgtttgtttgtttgtttgtttctctctagacaggttttacc 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)