BAC Information

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BAC

Clone NameMSMg01-095O02
Chromosome7 (Build37)
Map Location 30,636,577 - 30,637,147
singlet/doubletsinglet
Overlap geneBC027344
Upstream geneLgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik
Downstream geneZfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095O02.T7 (MSMg01no095_o02.b1)MSMg01-095O02.TJ (MSMg01no095_o02.g1)
ACCAG312690AG312691
length684697
length of high quality
(start - end)
319 (31 - 349)622 (73 - 694)
definitionCHROMAT_FILE: MSMg01no095_o02.b1 PHD_FILE: MSMg01no095_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:02 2005CHROMAT_FILE: MSMg01no095_o02.g1 PHD_FILE: MSMg01no095_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCTAACGTG
TTATGACTGGCTTTGGTTTTATGAGACAGGGCTTTAACACTGTATCTCTG
GCTGGCCTCTAACTCCTATATAACCCAGGCTGCTCTCAAATAGGCCAGCT
TCCAGCTGCTGCATTCCTCAATGCTGCAGTGTGGTATCTGGTATGTGTGG
GGCAGTGGGCTGGGCAGAGACAGCCTGGTCTCCAATCAAGCAATATCTAG
AACCCCAGGGTCCTGATGGATGGTGATTTCCACCAACATGAGACGGAAGG
TGTTCGATCATGTCTCCTGGACTCCTGGACCCTGTTGAAGTTACCACTCC
CACAGCCCCCACACGAGAGATGTGTGACTAGCAGTCAAGCAGACAATGTC
CCAAGCTCCGGGCATTCTGGCTAGACACTACCCCCACAGTTACCTGACCA
TAACCAGGTATGGTCCTCTCCATAGTTACTTGGCAAAAGCAAGATGGTCC
GGCCTATAAAAGGATCCGCTTGGCCCCCCCTCGTACTCTTAAACTCACCT
TTCTTACTCTCTAGCCCTCCTTCTCTCTCTCCTTCCCCCCTCTCACCACA
TGGNCATGGCTGGCCTCTCTCCCTCTTTTTACCTTCTCTCTTTCTCCCTG
CCATTCTACAATAAAGCTCTAAAACCAGAGACTG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGGGAATTTTTCAGAGGGTAAATGCTAA
AGCCCCCATAGGTGGGTGGTTTTTGGTCATTCCTCCCTGCGCTGCCCCTC
CCCCCCCATTGGTTGCAGTTTGTTAGTCATGCTCCAGGGCTAGCAGACTG
AGGTAGCAGTTAAGTTTAGAGAAGCTGAGCTGAGACAGAGAAGATATTGT
TAGGAGACAGATAAAACAAGAACCCACAAACAAAGTAATTAAAAATAAAA
GAAAAAATTAAAGAGCAAAAAGAAACGTTTACAAAAAGCTACACCACCAC
ATCAGCCGTCTCAGTAAATATCTGGTGAGTCTGGTGAGGGCGTAGTTAGG
CTTCAAACGCGTCGAGTTGTGTGGTGTGCCTTCTGTTGTATGCTGTGGAT
GAAAATGACTCTGTAGGTATCAGACTGTTGTTGGCCATGAAGAGGATAGA
AGGCACTGGTTATCGATGTGCATGGGGAGAGCCCTGGGCAGGTGCAGTGG
GCTTTCAGCTGGGAGATGACCATCGGGTATCTAATTCAGGAATGGGTTAG
TTAGAGGGGACATTTATGGAAAGACAGAGTGATCCTATTTCATACGCTGG
TCTTTGCGGTGGTTTGCGTATAACTAATTGAATCCTGATTATCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_o02.g1 MSMg01no095_o02.g1 CHROMAT_FILE:
MSMg01no095_o02.g1 PHD_FILE: MSMg01no095_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:02 2005
         (622 letters)



>mm_chr7_30636127_30637147
          Length = 1021

 Score =  864 bits (447), Expect = 0.0
 Identities = 541/585 (92%), Gaps = 23/585 (3%)
 Strand = Plus / Minus

                                                                        
Query: 47   gtttttggtcattcctccctgcgct--------gcccctccccccccattggttgcagtt 98
            |||||||||| ||||||||||||||         |||| |||||||| ||||||||||||
Sbjct: 1021 gtttttggtccttcctccctgcgctacccttccccccccccccccccgttggttgcagtt 962

                                                                        
Query: 99   tgttagtcatgctccagggctagcagactgaggtagcagttaagtttagagaagctgagc 158
            ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 961  tgttactcatgctccagggctagcagactgaggtagcagttaagcttagagaagctaagc 902

                                                                        
Query: 159  tgagacagagaagatattgttaggagacagataaaacaagaacccacaaacaaagtaatt 218
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  tgagacagagaagatattgttaggagacagataaaacaagaacccacaaacaaagtaatt 842

                                                                        
Query: 219  aaaaataaaag-aaaaaattaaagagcaaaaagaaacgtttacaaaaagctacaccacca 277
            ||||||||||| ||||||||             |||||||||||||||||||| ||||||
Sbjct: 841  aaaaataaaagaaaaaaatt-------------aaacgtttacaaaaagctacgccacca 795

                                                                        
Query: 278  catcagccgtctcagtaaatatctggtgagtctggtgagggcgtagttaggcttcaaacg 337
            ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 794  catcagctgtctcagtaaatagctggtgagtctggtgagggcgtagttaggcttcaaacg 735

                                                                        
Query: 338  cgtcgagttgtgtggtgtgccttctgttgtatgctgtggatgaaaatgactctgtaggta 397
            |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 734  cgtcgagttgtgtggtgtgccttctgttgtatgctgtgaatgaaaaggactctgtaggta 675

                                                                        
Query: 398  tcagactgttgttggccatgaagaggatagaaggcactggttatcgatgtgcatggggag 457
            ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 674  tcagactgttgttggccatgacgaggatagaaggcactggttatcgatgtgcat-gggag 616

                                                                        
Query: 458  agccctgggcaggtgcagtgggctttcagctgggagatgaccatcgggtatctaattcag 517
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615  agccctgggcaggtgcagtgggctttcagctgggagatgaccatcgggtatctaattcag 556

                                                                        
Query: 518  gaatgggttagttagaggggacatttatggaaagacagagtgatcctatttcatacgctg 577
            |||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 555  gaatggggcagttagaggggacatttacggaaagacagagtgatcctatttcatacgctg 496

                                                         
Query: 578  gtctttgcggtggtttgcgtataactaattgaatcctgattatct 622
            ||||||| ||||||||| |||||||||||| |||||  |||||||
Sbjct: 495  gtctttgtggtggtttgggtataactaatttaatcccaattatct 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1021
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1011
Effective search space:   618732
Effective search space used:   618732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)