BAC Information

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BAC

Clone NameMSMg01-096B06
Chromosome7 (Build37)
Map Location 93,165,482 - 93,165,930
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620641, EG620672, Vmn2r-ps68, EG620697, Vmn2r-ps69, LOC330581, LOC100039339, Vmn2r70, Vmn2r-ps72, EG233445, Vmn2r-ps74, EG244114, EG620928, EG546980, LOC666382
Downstream geneLOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1, EG546983, Vmn2r-ps87, LOC637896, EG621430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096B06.T7 (MSMg01no096_b06.b1)MSMg01-096B06.TJ (MSMg01no096_b06.g1)
ACCAG312840AG312841
length722732
length of high quality
(start - end)
517 (58 - 574)480 (70 - 549)
definitionCHROMAT_FILE: MSMg01no096_b06.b1 PHD_FILE: MSMg01no096_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:18 2005CHROMAT_FILE: MSMg01no096_b06.g1 PHD_FILE: MSMg01no096_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTATACGACTCCTATATTCCGAGAATCCGCGGAATTCCAGGAC
AGTTCCGACTATACAGAGAAAAACTTTCACGAAAAAACAGACAAATGAAA
AACAAACAAGCAAACAAAGAATCTGTATGAATTAAAAATAATTTTGGGAA
ACATGAAACTGAAATCTTATATCATATTTTACATAAGTGGCTTATATACA
AAATATCAAATGATATTCAAACATTAATATATATGAAGGTACAGTAATTT
AGAAAAAAATCTTAAATTTCTATCGATAAAACTTAGTCAAGCAAGACAAC
CTTCAAAATCAAGATACAAAATTTAAAAAAAAAAAACTTAAATTTCTATC
AATATTCATCAATACACACCAAAGTAAAATATGTAAGTCTAATAGACTAA
TGTTATAAAACAAATTTTTGCCTATATATATGCATGTGTATTTCAGATAT
ATGTATCTCTATCATCTCTCTCTTTCTTGCTCTCTCATATATATATATAT
ATATATGATTCTTATTATTCCATTTTCCCTCATTTTTCCCATCATTAGAT
AGAGAAGCTAGATCTATGATTTAAGCATTATTTTGTTTCCAAAATGAAGA
TAATCACTAATAACCAATTCTCCCCTACAATAGCAGCCCTAACACACCAA
ATGAACAAAATATCCATGCCACTTTTTGGCACGCCTGCGTTTCATGCTGC
TAAAACTATTTGACTGAAGGTA
GATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTTCCATTGTTGGTGGGATTACAGCTGATA
CAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGACATAGT
ACTACCTGAGGACTATGTCCTCAGTTAAACCACTCCTGGGCATTTACCCA
AACTTGATTTTATTAAATATTACAAAGGCTATTCCAGCTTGTTTCTTGTG
ACCATTTGCTTGAAAAATTGTTTGCAACCTTTGACTCTGAGGTAGGGGCT
GTCTTTGTCACTGAAGTATGTTTCCAATATGCAGCAAAATGTTGGTTCCT
GTTACATATCAAGTCTCTTAGTCTATTTATTTTTTGGGGAATTGAGTCCG
TTGAGATTAAGAGATACGAAGGAAAAGGGGCTTTTACTTCGTGTTGTTTT
TGTTATTAGAGATGGAATTATGTTTGTGTGGCTATCTGCTTTTGGGTTTG
TTGAAAGATTATTTTCTTGCTTTTTCTAGGGTACAGTTTCCCTCCTTGTG
TTGAGGTTTTCCATCTATTGCCATATGTAGGACTGGATTAGTGGAACTAC
ATTGTGTATATTTGGAAAGATATTGTGTAAATTTGCTTTTGTCATGGAAT
ATCTTGCTTTCTCTGTCTATGGTAATTGTGAAGGTTTGCTGGCCAATCTA
CCCCTGGATTGACACTTGGATTCTCTTATGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_b06.b1 MSMg01no096_b06.b1 CHROMAT_FILE:
MSMg01no096_b06.b1 PHD_FILE: MSMg01no096_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:18 2005
         (517 letters)



>mm_chr7_93165280_93166198
          Length = 919

 Score =  779 bits (403), Expect = 0.0
 Identities = 438/451 (97%), Gaps = 4/451 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatacagagaaaaactttcacgaaaaaacagacaaatgaaaaacaaacaagcaaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 203 actatacagagaaaaactttcacgaaaaaacagacaaatgaaaaacaaacaaataaacaa 262

                                                                       
Query: 61  agaatctgtatgaattaaaaataattttgggaaacatgaaactgaaatcttatatcatat 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agaatctgtatgaaataaaaataattttgggaaacatgaaactgaaatcttatatcatat 322

                                                                       
Query: 121 tttacataagtggcttatatacaaaatatcaaatgatattcaaacattaatatatatgaa 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 323 tttacataagtggcttatatacataatatcaaatgatattcaaacattaatatatatgaa 382

                                                                       
Query: 181 ggtacagtaatttagaaaaaaatcttaaatttctatcgataaaacttagtcaagcaagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggtacagtaatttagaaaaaaatcttaaatttctatcgataaaacttagtcaagcaagac 442

                                                                       
Query: 241 aaccttcaaaatcaagatacaaaatttaaaaaaaaaaaacttaaatttctatcaatattc 300
           ||||||||||||||||||||||||||| ||||||||   |||||||||||||||||| ||
Sbjct: 443 aaccttcaaaatcaagatacaaaattttaaaaaaaac--cttaaatttctatcaatactc 500

                                                                       
Query: 301 atcaatacacaccaaagtaaaatatgtaagtctaatagact--aatgttataaaacaaat 358
           |||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||
Sbjct: 501 atcaatacacaccaaagtaaaatatgtaagtctaatagactttaattttataaaacaaat 560

                                                                       
Query: 359 ttttgcctatatatatgcatgtgtatttcagatatatgtatctctatcatctctctcttt 418
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttgcctatatttatgcatgtgtatttcagatatatgtatctctatcatctctctcttt 620

                                          
Query: 419 cttgctctctcatatatatatatatatatat 449
           |||||||||||||||||||||||||||||||
Sbjct: 621 cttgctctctcatatatatatatatatatat 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 919
Length adjustment: 10
Effective length of query: 507
Effective length of database: 909
Effective search space:   460863
Effective search space used:   460863
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)