Query= MSMg01no096_l04.b1 MSMg01no096_l04.b1 CHROMAT_FILE:
MSMg01no096_l04.b1 PHD_FILE: MSMg01no096_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:09 2005
(291 letters)
>mm_chr7_77557547_77558237
Length = 691
Score = 516 bits (267), Expect = e-151
Identities = 285/291 (97%)
Strand = Plus / Plus
Query: 1 ttgggttccttttctcttagtacaaagccacatatctccactgtggagaacttagaacac 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ttgggttccttttctcttagtacaaagccacatatctccactgtggagaatttagaacac 260
Query: 61 acagaaaagcaagactatatttatatacaccattacctttggtgggggcccctctcgata 120
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 acagaaaagcaagacgatatttatatacaccatttcctttggtgggggcccctctcgata 320
Query: 121 tgatgatttttatagacaaaacccgccagcacttagatggaaaagactttcttccatgct 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 cgatgatttttatagacaaaacccgccagcacttagatggaaaagactttcttccgtgct 380
Query: 181 actggctggctggtagaaccagttctatgggacatcagtgccaggctccagctgattata 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 actggctggctggtagaaccagttctatgggacatcagtgccaggctccagctgattaga 440
Query: 241 atagggttagctatctggccctggttaggcgtgggtctgttctttccttga 291
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atagggttagctatctggccctggttaggcgtgggtctgttctttccttga 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no096_l04.g1 MSMg01no096_l04.g1 CHROMAT_FILE:
MSMg01no096_l04.g1 PHD_FILE: MSMg01no096_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:09 2005
(339 letters)
>mm_chr7_77736039_77736778
Length = 740
Score = 619 bits (320), Expect = 0.0
Identities = 335/340 (98%), Gaps = 1/340 (0%)
Strand = Plus / Minus
Query: 1 aaattcttttccatagagctgaattttattagtagcaaagttggagttgggcgcagcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aaattcttttccatagagctgaattttattagtagcaaagttggagttgggcgcagcaga 481
Query: 61 tgctaaatataagcgctgttcttttaatctcgtggggccaaatgtttcagatatttcacc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tgctaaatataagcgctgttcttttaatctcgtggggccaaatgtttcagatatttcact 421
Query: 121 gagac-gggccgtcaggataagtctcaatctaaactctgcaagtgctgaaatcctcaccc 179
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gagacggggccgtcaggataagtctcaatctaaactctgcaagtgctgaaatcctcaccc 361
Query: 180 atctcccagacacagagtttaagcctgctggaagaccacgtttttttaccccaacttcgc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 atctcccagacacagagtttaagcctgctggaagaccacgtttttttaccccaacttcgc 301
Query: 240 ctttaaactccacttgtctagatcgcccctgtcctggggcttttaacattatcagtgctg 299
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 300 ctttaaactccacttgtctagatcccccctgttctggggcttttaacattatcagtgctg 241
Query: 300 ttttaagtcacactcaaagtagagtccaatgtctaataaa 339
|||||||||||||||||||||||| |||||||||||||||
Sbjct: 240 ttttaagtcacactcaaagtagagcccaatgtctaataaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 740
Length adjustment: 9
Effective length of query: 330
Effective length of database: 731
Effective search space: 241230
Effective search space used: 241230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
