BAC Information

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BAC

Clone NameMSMg01-096M21
Chromosome7 (Build37)
Map Location 6,610,907 - 6,611,092
singlet/doubletsinglet
Overlap geneZim2
Upstream geneLOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350
Downstream geneZim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096M21.T7 (MSMg01no096_m21.b1)MSMg01-096M21.TJ (MSMg01no096_m21.g1)
ACCAG313395AG313396
length841780
length of high quality
(start - end)
200 (136 - 335)300 (128 - 427)
definitionCHROMAT_FILE: MSMg01no096_m21.b1 PHD_FILE: MSMg01no096_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:18 2005CHROMAT_FILE: MSMg01no096_m21.g1 PHD_FILE: MSMg01no096_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCACCGGGTTTTATGTATGCGTCACTGATGAACAGTCAGGTCCTCCACAC
AATCGCCNCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGTAG
CGGGGCGGAATTCTCTTAAAGTTGCGAAAGAACTGCAGTAAGCTAACTCC
TCCTCCTCCAATCCCGCGCTTAAAGGTCACCAGCTCCTACAACACCAGAG
AATACGCCTAAGCGATTTAAAAAAACAAAACCCCCAAAACCGGGAAAGAG
CTTAAGTTGAAACAATGTCTCTCACTTCAGGCGGCTGAGACAACTAAGTG
CTGAATTGCCAGACTCACACCCTAGGGGTGGGTGCGTCCCATCCCACTAC
CGTGTTCCGTCATTAGCACCCCCACACTTTTTTTTTTTTTAACAGGGAGC
AGACCTCCAAATACACAACCTCTTTTTCCCCCCCCTCCCCCCCGCGTGAT
ACATTCATTCCCCAATAATCCTTATTTGTGCCCCCCCCAACTTCTCTAAT
ATTCTTTTCATTAGTTTGTCACCGGTTCCTCACTCGCATTTTGACGTAGT
GCACTACAAACGCTGTTCTACGATTTTACCCATATTATTGCGATTTCCGC
TCATTCCTATTTGCCCCGCCCATCCTCGGATCTTTTCGACCCTCCTTCCT
TTTTCCGTTCTCTCCATCACCTCCTCTCCGCTCATTTTCTGGGTTACGAG
GGATATAGTGGCAGTCATCATTTTTCTTACTATTCCCCTTTTCCTCGCTT
CCCACCGATCAACACTCCTCCGTCTCATCCTGCCTATCTTTTATTTCTTT
TTATTTTCCCACCCCCTACCTTATTCCTCCCTGCCACTTCC
TCTTTTTTTTTTNNNTTNTCACGATTTCTCCCACACGACCACCCCACAAC
CCCCCCGATGAAGTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTAAATCTGGATGGCTCCTTC
TAATGGCCATCCAATGACAAGGACATGAAGGAAGGGATCTTTGCTTTTTG
CCTTCTTACCCTCACTCTCCGCAGAAAGAATTGTTGTGGCATTCCTTTAT
CAACAACTCTTGAGATCTCATTATAGACTGAAGGCAAGCAGCTCTTCAGG
AGTCCTCTAGACCAACAATTCTCAACCTGTGGGTCACAACCCTCTTTGGG
AGTTAAACAACTCTCCCATGGGGTTCCCTAAGACCCCTAAGAAACACAGA
TGCTTACATTTTGATTCATAACAATCACAAAATTAGAGTTATGAAGCAGC
AATGGAAATAATTCTATGTCCCACAATCACCACAACACGAGGAGCTGTGT
TAAAGGGTGGCAGCATTACGACGTCTGATAAAGCTCACTATGGTTTGCAT
CTCACAGAGCTGCAGGATGTATTGGCCAGCTGGACAGGTTCGCGAATCTC
CTCTCTTCAACAACTCTTACTGTTTATAATATCTTGCGTAGTTGAAATTG
TTGAAGCTTCCGCATTTTGTAAGTTTAGGGACTTCCTGAAACTTGACAGT
TGTTTGCTTCTTTTACCCCTACGGAAGCCCTCCTGATAAATTCCTGAATG
TTACGGACCTTTTCTTTTGGCCAACACCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_m21.b1 MSMg01no096_m21.b1 CHROMAT_FILE:
MSMg01no096_m21.b1 PHD_FILE: MSMg01no096_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:18 2005
         (200 letters)



>mm_chr7_6610707_6611306
          Length = 600

 Score =  296 bits (153), Expect = 6e-85
 Identities = 182/199 (91%), Gaps = 13/199 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtaagctaactcctcctcctccaatcccgcgcttaaaggtcaccagctcctacaacac 60
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 201 cagtaagctaactcctcctcctccaatccagcgcttaaaggtcaccagctcctaaaacac 260

                                                                       
Query: 61  cagagaatacgcctaagcgatttaaaaaaacaaaacccccaaaaccgggaaagagcttaa 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagagaatacccctaagcgatttaaaaaaacaaaacccccaaaaccgggaaagagcttaa 320

                                                                       
Query: 121 gttgaaacaatgtctctcacttcaggcggctgagacaactaagtgctgaattgccagact 180
           ||||||||||||||||||||||||||| ||     ||        |||||||||||||||
Sbjct: 321 gttgaaacaatgtctctcacttcaggcagc-----ca--------ctgaattgccagact 367

                              
Query: 181 cacaccctaggggtgggtg 199
           |||||||||||||||||||
Sbjct: 368 cacaccctaggggtgggtg 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 600
Length adjustment: 8
Effective length of query: 192
Effective length of database: 592
Effective search space:   113664
Effective search space used:   113664
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)