BAC Information

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BAC

Clone NameMSMg01-097G15
Chromosome7 (Build37)
Map Location 38,967,446 - 38,967,606
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp536, LOC100043453, EG627844, C80913, Ccne1
Downstream gene1600014C10Rik, Plekhf1, Pop4, LOC668519, LOC100043464, 1700010N08Rik, EG627975, EG625594, EG627983, EG434171, LOC100043467
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097G15.T7 (MSMg01no097_g15.b1)MSMg01-097G15.TJ (MSMg01no097_g15.g1)
ACCAG313849AG313850
length774680
length of high quality
(start - end)
164 (196 - 359)533 (51 - 583)
definitionCHROMAT_FILE: MSMg01no097_g15.b1 PHD_FILE: MSMg01no097_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:08 2005CHROMAT_FILE: MSMg01no097_g15.g1 PHD_FILE: MSMg01no097_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAAAAAAAAANAAAAAAAAAANNNNNNNTTTCCNNNNNTNNNTTAACNN
NNGGCATAAAATTGCGGCGCTATACGATCCTATTCAAANGGAGGGNGGAA
TNTNTTTTCCACAAAAGGGTGGAAATATGAGATTGTTTGTTTNTGTNTNN
AAGTGTTTCCCCCAAAGGTGTAANAGTTGGNATTGGTATTTAGNTTCAAA
TTGTTGAGCTTTCTGCCTCAGAAGGATCTCTATCTGAGTAACAGGATTGT
GGATGTACACACACCTACTGTGCACCTCTTTCACAGACGGCCTCAGCCGC
TACTGGCTGTCTAGGAACACTTCTAGGTGTCAGGGTGATAATTTTAGGGC
TTTATTTTTTTTTGGGGTGGACGACTTATAGAAAAGAAAXXXXXXXXXXX
XXXXXXXCCCCCCCCCCCCAAAAGGAAGAAAGGGGGGGAGAGTGAGGTTA
AGGAGAAAAAAATTTAAGTAAAAATTGTTGGGGGGTGTGGGGGGGAAGTA
TTGTATAGGGAGGTATATTGAAGTGTATAAAAATAATAGGTGGAAAAGAG
AGTAAGTGAGGAAATGTATTTTATAATTATTAGTAAAAGGTTTGGGTTTT
TGAAATGTTATTAATTTATTTGGGTTTTTTAGGTTTTTAGTTATAATAAT
TGATTAGGAGTGTGGTTTTGTTTAAAATAGGTAAAAATAAAATATGTTTT
TTATATGAGGTATTAGTTTATTTTTTTTTTTTTTGGGGGTGGTGTAAAAA
TTTTAAGAATAGATTATGTAGCAA
GGCGGCCGCCTGGTTCTCAAATTTAGGTGAACTATAGAAGTGTCAGCGAA
ATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAATAAAATG
TTCAACATCCTTAATCATCAGGGAAATGCAAACCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAAAATCAAAAATTCAGGTGACAGC
AGATGTTGGTGAGGGTGTGGAAAAAGAGGAACACTGCTCCATTGTTGGTG
GGATTGCAAGCTTGTACAACCATTCTGGAAATCAGTCTGGCGGTTCCTCT
TAAAACTGGACATCATACTACCGGAGGACCTCGCAATACATCTCCTGGGC
ATATATCCAGAAGATATACCAACCAGTAAGAAGGACACATGCTCCACTAT
TTTCATAGCAGCCTTATTTATAATGGCCAGAAGCTGGAAAGAACCCAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAA
AAGGATGGACCTGCAGGCCATCATCCTGAGTAAGGTAACCCACTCACAAA
GGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAAC
TTACGATACCCCAGATATCAGATACTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_g15.b1 MSMg01no097_g15.b1 CHROMAT_FILE:
MSMg01no097_g15.b1 PHD_FILE: MSMg01no097_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:08 2005
         (164 letters)



>mm_chr7_38967246_38967809
          Length = 564

 Score =  304 bits (157), Expect = 2e-87
 Identities = 160/161 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaaattgttgagctttctgcctcagaaggatctctatctgagtaacaggattgtggatg 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 tcaaattgttgagctttctgcctcagaaggagctctatctgagtaacaggattgtggatg 260

                                                                       
Query: 61  tacacacacctactgtgcacctctttcacagacggcctcagccgctactggctgtctagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacacacacctactgtgcacctctttcacagacggcctcagccgctactggctgtctagg 320

                                                    
Query: 121 aacacttctaggtgtcagggtgataattttagggctttatt 161
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacacttctaggtgtcagggtgataattttagggctttatt 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space:    86736
Effective search space used:    86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)