BAC Information

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BAC

Clone NameMSMg01-097K15
Chromosome7 (Build37)
Map Location 74,976,996 - 74,977,152
singlet/doubletsinglet
Overlap geneLOC665319
Upstream geneAdamts17, Lysmd4, Mef2a, EG665304, Lrrc28, Ttc23, Dmn
Downstream geneLOC100041771, Igf1r, C330024D12Rik, EG434197, LOC100041800, EG384639, Arrdc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097K15.T7 (MSMg01no097_k15.b1)MSMg01-097K15.TJ (MSMg01no097_k15.g1)
ACCAG314038AG314039
length795751
length of high quality
(start - end)
---160 (218 - 377)
definitionCHROMAT_FILE: MSMg01no097_k15.b1 PHD_FILE: MSMg01no097_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:29 2005CHROMAT_FILE: MSMg01no097_k15.g1 PHD_FILE: MSMg01no097_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAAAAAAAAAANNNNANNNNAANAAANAAAANAAANNNNNNNNNNNNC
GATAGGGNNNGGAGTTAGAAATTGAGGNAGNTAAAAGAGTGACTATTCGG
GACTTGACAGNGGAANNNANNTNCTTCCAACTACGGGGGGAGANAAAGNN
GNNNAGGNGNNAAAGNNAAGAANNNNNAAAAANCCCCAGGGANGNCCAAA
AAGNNAACGGGCAGAACNGNGGANCAGCCAAACGCAACGCAACGAACGAG
GAACACCAAGCCCGAAGAGCNNCGAGAAGGAGCAAGGGGGAGGGGAAAGA
CCGGACGGAGAAAACTTTCCAAAGCTGGATATCTGAACGTCTGCGTGAGC
TTTCCATGTTGAGCATCGGCCCTGCGTTTTTTTTTTTGTGGGCCAGGAAA
GCGAGAAAGAAGAAAAAATTTTTTTTTTTCCCCCCCCCCCCCCCGGAAAG
AAGAGAGAGGGGGGGGGGGGGGGGGNGGCCAGAAAAAAAAAAAAAAAACC
CGGGGGGGGGGGGCGGGANCCCAGGAAAAGGCAAACACAGAAACGGGAAG
GCGAGGGCGAAGAGAAGCAGGACAAACGGGGAGAGGGAAGGGGGAAGGGA
AAAAAGGATGAGCGCAGGGAGGAGGGAAAAGCACGCGAAAACAGGAGGCG
GCGCGGGACACGGGGCAAAAAAAAAAAAAGGAGAGGGGGAGGTGGGACCA
AACCAGGAGCAAAAAGAACGGGGAAAATAGCCGTATCGTTTTTTTATTTT
TTGTATGCGCGTGTTGTTGTAATTTAGGGGGTGTGGGTTTGGGGG
NAAACAACAAAANNANNANTTACGGAATTACCACCTTTCNCCCGCCTCCC
NNCCCTCGATGCTATGGGTGGCCTGGNGNCGCCTGTTTCCGACCGTAGGN
GAANNANAGAAGTACCGAGACCACCGGCAGNNGGGGNCAANCCAATCNGN
GGNGNNAAACAAGCTTGAAAAGCCAACACCCAAAAAAGGCCAAAAGNCAT
TGCCCCCAAGCATGAACCAGGCAAAAGGGCTTTTCCTTAGTGGGCACCTT
TTCTCCATGAAGGTCTATAAGTTAAATAAATTACCTAAAGAAGTTAGGTA
ATTAAATTACCTAAGGAAGTCTAGTTAGGTTTGAGTGACACAGATTCTTT
CCATATTCCACCAGTCTTTTTTTTTTTAGGGACCAGGCACGCGGCTGGAN
AGGGAATGTTATTATCCCCGCCCCGCCCATTCCAAAGGTCCACATCCAGA
AATGGAATCTATCACTTCTGAGAAAATTACTCTGGCTAGGAATCATGAAC
AAGTACAAAACGTTTCAGGAACCCAAGACCCTCTCAGCTCCTTGTAGCTC
AGTGGTGAGCCGCTCATCATCCATCTGCTCTGACACTGTACACCCGAATA
CCCCCCAAACAATATACCAAGCACAAGTCATGACCTCATATCGAGTTCGC
ATATCTTCTACGTCAGTCAGAACATACCGACAATTACCCAGCAAACCCTC
TTTTTTTTTTGTTATGGCTTTAAATGTCGAAAGGGGTCTCAATTTTTTCT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_k15.g1 MSMg01no097_k15.g1 CHROMAT_FILE:
MSMg01no097_k15.g1 PHD_FILE: MSMg01no097_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:29 2005
         (160 letters)



>mm_chr7_74976796_74977355
          Length = 560

 Score =  261 bits (135), Expect = 1e-74
 Identities = 149/157 (94%), Gaps = 6/157 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggcaaaagggcttttccttagtgggcaccttttctccatgaaggtctataagttaaat 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggcaaaagggtttttccttagtgggcaccttttctccatgaaggtctataagttaaat 260

                                                                       
Query: 61  aaattacctaaagaagttaggtaattaaattacctaaggaagtctagttaggtttgagtg 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 aaattacctaaagaagttaggtaaataaattacctaaggaagtctagttaggtttgagtg 320

                                                
Query: 121 acacagattctttccatatt------ccaccagtctt 151
           ||||||||||||||||||||      |||||||||||
Sbjct: 321 acacagattctttccatattagaattccaccagtctt 357


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 560
Length adjustment: 8
Effective length of query: 152
Effective length of database: 552
Effective search space:    83904
Effective search space used:    83904
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)