BAC Information

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BAC

Clone NameMSMg01-098E24
Chromosome7 (Build37)
Map Location 93,797,446 - 93,936,658
singlet/doubletdoublet
Overlap geneOlfr293, Olfr292, Folh1
Upstream geneVmn2r-ps74, EG244114, EG620928, EG546980, LOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294
Downstream geneEG546983, Vmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4, Tyr, Grm5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098E24.T7 (MSMg01no098_e24.b1)MSMg01-098E24.TJ (MSMg01no098_e24.g1)
ACCAG314526AG314527
length761778
length of high quality
(start - end)
316 (98 - 413)240 (146 - 385)
definitionCHROMAT_FILE: MSMg01no098_e24.b1 PHD_FILE: MSMg01no098_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:23 2005CHROMAT_FILE: MSMg01no098_e24.g1 PHD_FILE: MSMg01no098_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,936,349 - 93,936,658)(93,797,446 - 93,797,685)
sequence
NNNNNNCCCCCCCCCCNNCCCCCCCCCCCCCCCCCNNNNNTAAATATATN
NATAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCG
CGGAATTCAAAATATTGCAAGCACATTATATGAAATTTGTAAAGCACTAA
TAAAAAATGTCCTCCAGTTAACTCACCTCAAAGTAGACAGGTTAAAGTAG
TCTCATGCTTTTGGATTTTGACATAAATTGAATGAATATTTTATTGTGTT
AGTTACCTATTAGTTTATATCATGGATTAGGGATCCAAGAAAAAATAATA
TGGAGAAAATAGAGATCCCAATCCCCATGAGACACATATCAATAACTTAA
TCTTCCTCTTGAAGGCAATATGTCAAACAGTGTCAAGGTGAAGATCAATA
ATGTACTTTAAAGTTACTTTTGAGCATCCTTCATATCTAATCTATAACAA
TATTGGAAAGTTAGAGGCTAAATAAATGAAATAGCTTCTTATTCTTTCTT
CTACCACATGAATTTCAAGTTAGAGAGTATAATGGAAGAAACAAGCGGAA
TCTATTTGTTCACCAAGCAAGAAAATTGGAACAGGTCTGTCCCCATAGGA
ATCGGAGCATTTCAAATTTGGTTTTGAAAATGACAAATTTCTGTAACATA
TACTCTCAACTCAAACTATTGTTTTAAATGACCCGAAACTGGATAAACCA
ATGATCCTTTCCTCACATTGGATCTGATGATATCTATGATTTACCACCTG
TTTGTATTAAA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCNN
NNNTATATATAATCCGAATCGATGATATGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCTGGGC
ATTTTGTCCTAATTAAGGGCTGTGTTCTAAGATTCTCCGTACTCAGGAGG
ATGCCAATGACTTTGAGGAAAGAGTACAAGACTAGTGACTGTTTAAAGGC
TAGATGGGTATTTTACTAAACTGAAGGCTTGTACAATTAGTTATAGATAG
GAATATTTGATCGACGTATCTGTAAGATTTGGATATTTTTAAGTGAGCAA
CACATAGCTTCATTCTCATTTTACAGTGAAGAACATTGTCTCGGTAAGTA
TACTGAGACCATGGTTGTTACGTTTATTTTCACCTCCCATTTACTGGGTA
ACTCTCCAGCAATCCCTTGCTTCCTTTCGCTTGCTTAAAAAAAAAAATTC
AAAGGTGGGTGGGGCTACAATTATGGAATATTGACGATATAATATATTGT
CATATTTTTACCGTTGATACAACCAGTAACTTCCTTATTACAATGCGCCC
AGACTGTTTTCTACTTTAAAATATCACCCAACCCCCGACAAATCTTGTTA
TTTTCCCGAGCCTCCATTTCAAATTTGAAAACATAACCCATGCATTATTG
TATTTTTATGCCGACTTACTTACATTCAATTTTATTTTCCATTTTTTTTC
CGTTTCCCCCCGTCCCAACCTTTTTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_e24.b1 MSMg01no098_e24.b1 CHROMAT_FILE:
MSMg01no098_e24.b1 PHD_FILE: MSMg01no098_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:23 2005
         (316 letters)



>mm_chr7_93936144_93936859
          Length = 716

 Score =  545 bits (282), Expect = e-159
 Identities = 303/310 (97%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcaaaatattgcaagcacattatatgaaatttgtaaagcactaataaaaaatgtcc 65
           |||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 515 gaattcaaaataatgaaagcacattatatgaaatttgtaaagcactaataaaaaatatcc 456

                                                                       
Query: 66  tccagttaactcacctcaaagtagacaggttaaagtagtctcatgcttttggattttgac 125
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tccagttaactcagttcaaagtagacaggttaaagtagtctcatgcttttggattttgac 396

                                                                       
Query: 126 ataaattgaatgaatattttattgtgttagttacctattagtttatatcatggattaggg 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ataaattgaatgaatattttattgtgttagttacctattagtttatatcatggattaggg 336

                                                                       
Query: 186 atccaagaaaaaataatatggagaaaatagagatcccaatccccatgagacacatatcaa 245
           || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 335 atacaagaaaaaataatatggagaaaatagagatcccaatcccaatgagacacatatcaa 276

                                                                       
Query: 246 taacttaatcttcctcttgaaggcaatatgtcaaacagtgtcaaggtgaagatcaataat 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 taacttaatcttcctcttgaaggcaatatgtcaaacagtgtcaaggtgaagatcaataat 216

                     
Query: 306 gtactttaaa 315
           ||||||||||
Sbjct: 215 gtactttaaa 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no098_e24.g1 MSMg01no098_e24.g1 CHROMAT_FILE:
MSMg01no098_e24.g1 PHD_FILE: MSMg01no098_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:23 2005
         (240 letters)



>mm_chr7_93797246_93797885
          Length = 640

 Score =  402 bits (208), Expect = e-117
 Identities = 232/240 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggcattttgtcctaattaagggctgtgttctaagattctccgtactcaggaggatgcc 60
           ||||||||||||||||||||||||||||||||||||| |||  |||||||||||| | ||
Sbjct: 201 tgggcattttgtcctaattaagggctgtgttctaagagtctttgtactcaggagggttcc 260

                                                                       
Query: 61  aatgactttgaggaaagagtacaagactagtgactgtttaaaggctagatgggtatttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgactttgaggaaagagtacaagactagtgactgtttaaaggctagatgggtatttta 320

                                                                       
Query: 121 ctaaactgaaggcttgtacaattagttatagataggaatatttgatcgacgtatctgtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaaactgaaggcttgtacaattagttatagataggaatatttgatcgacgtatctgtaa 380

                                                                       
Query: 181 gatttggatatttttaagtgagcaacacatagcttcattctcattttacagtgaagaaca 240
           |||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||
Sbjct: 381 gatttggatatttttaagtgagtaacacatagcttcattctcatttttgagtgaagaaca 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)