BAC Information

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BAC

Clone NameMSMg01-098O18
Chromosome7 (Build37)
Map Location 74,398,011 - 74,398,183
singlet/doubletsinglet
Overlap geneMef2a
Upstream geneLrrk1, Aldh1a3, Asb7, Lins2, Lass3, Adamts17, Lysmd4
Downstream geneEG665304, Lrrc28, Ttc23, Dmn, LOC665319, LOC100041771, Igf1r, C330024D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098O18.T7 (MSMg01no098_o18.b1)MSMg01-098O18.TJ (MSMg01no098_o18.g1)
ACCAG314979AG314980
length694706
length of high quality
(start - end)
50 (170 - 219)173 (165 - 337)
definitionCHROMAT_FILE: MSMg01no098_o18.b1 PHD_FILE: MSMg01no098_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:10 2005CHROMAT_FILE: MSMg01no098_o18.g1 PHD_FILE: MSMg01no098_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTACCTATATCGAGAGGATCCGCGGAATTCATGAGGTCTTCCGGATGA
AGGAGACAAGAAGATTCCTGGTACAAACTATAAAAGAAAGGGGAGTGGGG
CCATGTGACTGCCACCTTCACCTTTCATTTTAAAAATCTGTAATGGCAAC
TTCACATAGGTGAGCTAGATAGTTCTGCGTGTTCATGTGAGTTTATAACA
TCTTTCCTGGTTTTCTATGGTTTCACAAAATCACTGGCATTACTCAAATA
TTTTTAAACACCATCCCAAGATCCTAAGGAAGACAATGACTTACAGTTCA
TGTAAGTTCAGGGCAATGGAATATCTCCATGGCTCTGGTTATAATGCACC
TGCCTGGCGACTTGAGCGTAATCTCCATTATCAGTGTGTTGTAAACAGGG
AACCTACTCCTGTAGTTCTTCACACAGGACTGTAGCACACTATCCTGCCT
TTATAATAAATCAATAAATGTAGTTTTCAAAAGCAGACTTGCTATCAGTC
TAAGGTTAAGACATGAAGTGCAGACAGGCTGCTGTGTTGGTGTTTGTTAA
CGATGTGACGCATTAGGCCATTGCTGCCTTCACAGATCCACATATTAGTA
TTCCCGCTGCCTTCATTGTTTCTGAGCCGCATTTATTATTATGATTGCTT
AGTTATGTACTTTAGTTCACACATACTTTTACGATATTTTCCTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCATAGGAAAATTGATAAGGTGAAAAAAGAACCAACTAGAAATTCT
GGAGATCTAAAGAACCAATTAATCATATCAAATAAAAAGCAGGAAGCATC
TACAGACAAGATGAAGCAGAGGAACTATTTTGCGATGGAAAACAAGGTTA
AGACAGTAACATGTACAGATAATTATACAAACAATGGAATCAAATTTCCA
AGAAACCAAACTAAAGCAAAAGGAACTAAGATAGTCAATAGCTCAAATAA
CCCATTCTCTAAAATATCTGAAAATTTCTGAAACCATGAGAAAGAATGTG
CTCACAACTTCAAATAGACATGGGCAACGAACTTCTTCATGATTTCCCAC
CCACCACGAATGATTCACAAGATGGACTGATGGGTAAAAGCACTTGTTAC
CAAAACTGATGATCTGAGTTCAATCCCTGAGACCCACATGGCGATAGAGA
AACCGACTCCAATAGAATATCCTTCAATTTCCACACCTTGCCGAAACATA
TGCATATACCACCACCCATATACTTAATATATATACATAACCGTAATTAC
AACCATTTATGCAATATACTATACTAAAAGCCCTATGGCCCGCGTCAATG
CAATGGCTCAGTACGTAATATGGGATTGAGTGCCGCGATCTCGACCTGTC
TTTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_o18.g1 MSMg01no098_o18.g1 CHROMAT_FILE:
MSMg01no098_o18.g1 PHD_FILE: MSMg01no098_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:11 2005
         (173 letters)



>mm_chr7_74397811_74398383
          Length = 573

 Score =  296 bits (153), Expect = 5e-85
 Identities = 168/173 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcagaggaactattttgcgatggaaaacaaggttaagacagtaacatgtacagataatt 60
           ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 agcagaggaactattctgggatggaaaacaaggttaagacagtaacatgtacagataaat 260

                                                                       
Query: 61  atacaaacaatggaatcaaatttccaagaaaccaaactaaagcaaaaggaactaagatag 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaaaacaatggaatcaaatttccaagaaaccaaactaaagcaaaaggaactaagatag 320

                                                                
Query: 121 tcaatagctcaaataacccattctctaaaatatctgaaaatttctgaaaccat 173
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 tcaatagctcaaataacccattcactaaaatatctgaaaatttctgaaaccat 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 573
Length adjustment: 8
Effective length of query: 165
Effective length of database: 565
Effective search space:    93225
Effective search space used:    93225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)