BAC Information

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BAC

Clone NameMSMg01-099K22
Chromosome7 (Build37)
Map Location 84,060,307 - 84,060,862
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC434200, EG244071
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099K22.T7 (MSMg01no099_k22.b1)MSMg01-099K22.TJ (MSMg01no099_k22.g1)
ACCAG315562AG315563
length7101,207
length of high quality
(start - end)
560 (43 - 602)---
definitionCHROMAT_FILE: MSMg01no099_k22.b1 PHD_FILE: MSMg01no099_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:17 2005CHROMAT_FILE: MSMg01no099_k22.g1 PHD_FILE: MSMg01no099_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGGACTTCCCCGGCTACAGAGAAACCCTGTCTTGAAAAAAACAAAAC
AAACAAACAAAAAGATTTGTTGTTATTAGAAGACATAGAGGAAACTGTGT
TGCATATTCTTTTTCATTTTTAAGTACATGGCATCAATATTATTATGCAC
TGAGTAAATATTTCCCTACTATATTGAGCATATTTGAAGCGGTAGGTTTA
GCTATGAAATACACTCAGGAGAAAGAATATGTTCTTAACCAATGTCATTT
TCATCTTACAAAGCCTGGACCTAAGTAGAAGTTTAATAATTGCTTCTTGA
TTAGCAGGTTTATTGGTGGGATGGAGATTTGAACTTATGTCAAAGAACTT
CATTTTCTTTTGCTTTTCCATTTCTTATTTATTTTTTATAAAATATTCCT
AAACAAAAGACAACTAGAGCTGAATGCTGATCTCAAGACCAAATATATGG
ACTACAAGAAACTCTCAGAAAAAAATCTAAGCGTGAAATCACCATAAACA
GACCTATGAAGAGCCTTGAAGTAACCTATGGCACTGAAGATGGCCTTAGC
CACGAAGGGCAGTCCAGTGTATAAGGTGAGAGAAAAATGTTTCCTGAGGG
AAACTATAAATATGGTATTAAAGGAGTGACACAAATATGAAGACGCCAAG
ATGTAACATG
GCTTTTTCCTCTCTTTCCTTCCTTTTTCTGCCCCCCCTCGGTGTGCGCCC
TCCCGTGTTCGGCTTTACTTGCGCGCTTATTTATTCTCGTGTGGCAAACA
TACTTCCTCACCCGGGCTCTCCAATAATAACCCCCACGGAATAAACGACG
CTGGTCAATTTACTCAATTTTTCGGCGATATTACCGGAATTTACCGAGAC
GGTGTAACGCAATGTCCTCGCGCGATCACGTAGCGCGCGATCTTACGGGA
GTATAACGCGCCTACCTATGATGTTCGTTCTTGCCCCCTTTCTCTCGTCC
AGGTCCTCTCTTATTTCTAAGAATCCCGGTCTATACACAAAATATCCTAT
CCCCGGTATTAATATGTGGCGGGGCTCGCGGCCCGGCAATATTATCGTTT
AACCGCGGCAATCCTCTCTACTATCATACTATTTCGACTATTAATACTCA
TCCCCCCGCCCACATTCTCTTGTTTTATCTTACCCCTGCCCCCGTTCTAT
CGCTCTCAACCTTCTATTAATTAAAATCTTCGTTCGCCGTAAATGAGCTA
CCAATGATAGAGCATGCGTAATAATATATTTGTAATAGGCCGCCTCTTGT
GTATTGCGACCGACACAAGCGTGTATTTTAATTTGTCGAAAATAGAACGC
GGGCTTTGGGATACGCATGCCCCGATGTTTTCCCGCTAAAGATACTAAAA
ATATCTACGATATACCCTCACCCGCAGATTACCCGCCTTAGTTACCTTCC
CATGCGTTTTTTATGCGATTCTACAATTACAAGGCCCCGCTTTTTTACTA
GAGCGCGGCACGGACACGCGTAAAAATAATAACTACCCCTCCAATTACCC
CATAATCTCTTATACTCCATCGCCTTGCTCTACAACCCGCTTTATCCGAT
TATGTGCGCGCACACATGGTATAAAACCGGACCGATAATCTTATCTCTCT
ATATTCTTGTGCGCCTATACCCGCATATCATTGTGACTGTTCCGCGCATG
ATTGGAGACAGACAGTATTATTATATCTAGCCTCGCCGCTTATTCTCCGC
GCTATCTCACTAGTTCACCAGGTATATATATATTTATCTATTGCGCCCCA
CACGTTATATACTAAGAGCTGTTCTGCGCGTATTCTAATTATATATTTCC
GCCCACACTCACATCACGCTCATTATATTTGCGCGACGACACGACGCCTC
GATACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_k22.b1 MSMg01no099_k22.b1 CHROMAT_FILE:
MSMg01no099_k22.b1 PHD_FILE: MSMg01no099_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:17 2005
         (560 letters)



>mm_chr7_84060228_84061187
          Length = 960

 Score = 1029 bits (532), Expect = 0.0
 Identities = 550/556 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggacttccccggctacagagaaaccctgtcttgaaaaaaacaaaacaaacaa 64
           ||||||||||||  ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaattccaggacagccagggctacagagaaaccctgtcttgaaaaaaacaaaacaaacaa 576

                                                                       
Query: 65  acaaaaagatttgttgttattagaagacatagaggaaactgtgttgcatattctttttca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 acaaaaagatttgttgttattagaagacatagaggaaactgtgttgcatattctttttca 516

                                                                       
Query: 125 tttttaagtacatggcatcaatattattatgcactgagtaaatatttccctactatattg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tttttaagtacatggcatcaatattattatgcactgagtaaatatttccctactatattg 456

                                                                       
Query: 185 agcatatttgaagcggtaggtttagctatgaaatacactcaggagaaagaatatgttctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 agcatatttgaagcggtaggtttagctatgaaatacactcaggagaaagaatatgttctt 396

                                                                       
Query: 245 aaccaatgtcattttcatcttacaaagcctggacctaagtagaagtttaataattgcttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aaccaatgtcattttcatcttacaaagcctggacctaagtagaagtttaataattgcttc 336

                                                                       
Query: 305 ttgattagcaggtttattggtgggatggagatttgaacttatgtcaaagaacttcatttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ttgattagcaggtttattggtgggatggagatttgaacttatgtcaaagaacttcatttt 276

                                                                       
Query: 365 cttttgcttttccatttcttatttattttttataaaatattcctaaacaaaagacaacta 424
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 cttttgtttttccatttcttatttattttttataaaatattcctaaacaaaagacaacta 216

                                                                       
Query: 425 gagctgaatgctgatctcaagaccaaatatatggactacaagaaactctcagaaaaaaat 484
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 215 gagctgaatgctgatctcaagaccaaatacatggactacaagaaactctcagaaaaaaat 156

                                                                       
Query: 485 ctaagcgtgaaatcaccataaacagacctatgaagagccttgaagtaacctatggcactg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 ctaagcgtgaaatcaccataaacagacctatgaagagccttgaagtaacctatggcactg 96

                           
Query: 545 aagatggccttagcca 560
           ||||||||||||||||
Sbjct: 95  aagatggccttagcca 80


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)