BAC Information

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BAC

Clone NameMSMg01-099N09
Chromosome7 (Build37)
Map Location 72,148,909 - 72,149,091
singlet/doubletsinglet
Overlap genenone
Upstream geneTrpm1, BB128963, Mtmr15, LOC100041582, Mphosph10, Mcee, Apba2, 5730507A09Rik, Ndnl2
Downstream geneTjp1, Gm1693, EG665234, Tarsl2, Tm2d3, LOC665241, Pcsk6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099N09.T7 (MSMg01no099_n09.b1)MSMg01-099N09.TJ (MSMg01no099_n09.g1)
ACCAG315680AG315681
length727693
length of high quality
(start - end)
185 (71 - 255)100 (58 - 157)
definitionCHROMAT_FILE: MSMg01no099_n09.b1 PHD_FILE: MSMg01no099_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:29 2005CHROMAT_FILE: MSMg01no099_n09.g1 PHD_FILE: MSMg01no099_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAGAGGATCC
GCGGAATTCTTCATTTGCGAAAGCCGGGGACTGTTACCCCTTCCCTTTCC
TTTCATTACTCTGGCCCTTCTTTCCTAATTGTTATGAAAAGTGGACCAAA
GGCAATGCCTTACTAGTTTTTCATTACTATAATAAAATACCAGAGGCTGA
GTACTTTTGGAGCAAAGAGGTCTGTTCAGCCCATGGATGTAGAGGCTGAA
ATCCAATAACACAGCAACAACTCTGGTGAGGTCCTGTTGGCGGCATCACC
TCATGGTGACTAGCACTGATATGTTTGAGGTTTGAGAATGAAAGATCACT
TTGCAAGGGTGTAGGCCACAGAAACTGAGTCCCACAGTTCCTACGTTGAC
CCAAAGACTTCTGACCAGCCCTCACTGTCTAAAGATTCCACCCTCAACAT
CATCGCACTGAATACAGCTCCCACCACCTGAGTCTTTGGGCACTCATTCT
AATTATACCCTAGTCCTTTCCTGAATGGACTCTGAAATCAATTCCCAGCC
TCGCCTAATTTCCTTCAAGTAAGTTTGAAACCTTGTTGGCTTTTGATTTA
ATCCTCGGCACCTCTTCTTCACACCTTTCCTATCTTTCTCTCTTTTCTGA
TACCTTCTTACTCCTCAGTGCGAACCCCCCTTCTTGTTTTCCTTCCCCCT
GCCTCTCGCAATTTCCTTCTTCTACTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXATCACTGTTGCTCAAACTGGAGAAGCTTAAAAACAAACAAACA
AACAAGCTTCAGGATGGAGCTGGACTCCAGAACTTTAGCTCTGTCCGGTG
CCTGCTGGGATACATCAATAAAGCTGCCGTTTGGTTTTCTGGTAGCCTGA
TTTCTATAAGAAGGTGACCTATGTCAATGTTGTGAGAGATCAACAAAATA
CAGCATCTACTCATGGAGGAGTGGGCTTTACTATCCAATGATGTGAATCA
CTGTTTCGTATCAAATGGTATGTGCAAGATCTAAAATCAGGATTTTTGAC
CCCACGCGCGCCCTTGACACCTCTGTTATGCCATATTCTGTAGTCTCCTG
TTATAGAATATAAACTAAAAAATGGTCATTCTATCAAGGAAGTAAAGGTA
ATGAACCATCTCATCTGGAGCACATGACAGCTCATCTTATGTGCTGACTA
GACTGTATGAATTATACCATGACACCCTGTCTCCTGTTGTGCCTGTGACC
CCCAGCCGCTTCCCTTTCTTTGTATATTTTGTGAAGGTTCTACCTTTTTT
GTTCTTTGCCTATCCTCTATTCTCCTGCACTTTCTCCACTTGTCACTTTG
TTTTCGGTGACCCTCCCCCTCTTTCCCTGTACTTCCCCTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_n09.b1 MSMg01no099_n09.b1 CHROMAT_FILE:
MSMg01no099_n09.b1 PHD_FILE: MSMg01no099_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:29 2005
         (185 letters)



>mm_chr7_72148709_72149293
          Length = 585

 Score =  346 bits (179), Expect = e-100
 Identities = 182/183 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagccggggactgttaccccttccctttcctttcattactctggcccttctttcctaatt 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 383 aagccggggactgttaccccttcccttccctttcattactctggcccttctttcctaatt 324

                                                                       
Query: 61  gttatgaaaagtggaccaaaggcaatgccttactagtttttcattactataataaaatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gttatgaaaagtggaccaaaggcaatgccttactagtttttcattactataataaaatac 264

                                                                       
Query: 121 cagaggctgagtacttttggagcaaagaggtctgttcagcccatggatgtagaggctgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cagaggctgagtacttttggagcaaagaggtctgttcagcccatggatgtagaggctgaa 204

              
Query: 181 atc 183
           |||
Sbjct: 203 atc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 585
Length adjustment: 8
Effective length of query: 177
Effective length of database: 577
Effective search space:   102129
Effective search space used:   102129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)