BAC Information

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BAC

Clone NameMSMg01-101N12
Chromosome7 (Build37)
Map Location 78,710,469 - 78,710,763
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC665535, Mctp2, LOC100042873
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101N12.T7 (MSMg01no101_n12.b1)MSMg01-101N12.TJ (MSMg01no101_n12.g1)
ACCAG317148
length720715
length of high quality
(start - end)
---294 (76 - 369)
definitionCHROMAT_FILE: MSMg01no101_n12.b1 PHD_FILE: MSMg01no101_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:13 2005CHROMAT_FILE: MSMg01no101_n12.g1 PHD_FILE: MSMg01no101_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCG
CGGAATTATTTATAGTACCATCATTCTGCAGTCCACATGAATAATCTTGA
TCATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCT
NCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGATTCATCAATTAACTCTAATGAGT
GTCTATATCTTCCCTGTACCTCTGACTTCAACTTTAGTGTTTCCATATTT
TTGTATTTCTCTGTTTATTCTATTTAGAATAAATAATTACGTTGGAAGTT
TCTCCTATTAATTTTTAATAATGAATAAGTCTAGTATCTAGGAATTTTCT
TCTGATCATTGATTGAAATGCACATCATAATTCTGATAAGTAATATCTTT
TTATTTTTAAATCTGCAGTGTTTTTAGACACACATTTTCAGCTTATATTT
TTCTCTTCTGTTAAGAACTGTAAAATAACAACATCCCCAAGTCAAAAATT
CCTTATAAAAATATGAAACTGGAAAGATAAGAATACAAGTCTCTAATTTT
TTTAGGTCAAAATATCAGTTATATTAGTAAAAGTAACAGCTGTGCATCTT
CTCTCATCTAAAGAAACACCATGTGATAAAATTATATCATAATCAAAAAT
TCAATGAGAAAGTGAATAACTAGAACTAAATTCTTTTGCATTAGGTAATC
CAGATACATATTGAGTTTTTTTGATGACTTCCATAGGTTTTGCTTTTTCT
TTGCAATTTTGGGATTTCTCCTTGACTTACAATGTGAATTATTAATTCAG
CTCCCATAAAAATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_n12.g1 MSMg01no101_n12.g1 CHROMAT_FILE:
MSMg01no101_n12.g1 PHD_FILE: MSMg01no101_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:13 2005
         (294 letters)



>mm_chr7_78710269_78710963
          Length = 695

 Score =  524 bits (271), Expect = e-153
 Identities = 289/295 (97%), Gaps = 1/295 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattcatcaattaactctaatgagtgtctatatcttccctgtacctctgacttcaacttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gattcatcaattaactctaatgagtgtctatatcttccctgtacctctgacttcaacttt 260

                                                                       
Query: 61  agtgtttccatatttttgtatttctctgtttattctatttagaataaataattacgttgg 120
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 261 agtgtttccatatttttgtatttctctgtttattgtatttagaataaataattaagttgg 320

                                                                       
Query: 121 aagtttctcctattaatttttaataatgaataagtctagtatctaggaattttcttctga 180
           ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 aagtttcccctattaatttttaataatgaataagtctagtatctagaaattttcttctga 380

                                                                       
Query: 181 tcattgattgaaatgcacatcataattctgataagtaatatctttttatttttaaatctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcattgattgaaatgcacatcataattctgataagtaatatctttttatttttaaatctg 440

                                                                  
Query: 241 cagtgtttttagacacacatttt-cagcttatatttttctcttctgttaagaact 294
           ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 cagtggttttagacacacatttttcagcttatatttttctcttctgttaagaact 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 695
Length adjustment: 9
Effective length of query: 285
Effective length of database: 686
Effective search space:   195510
Effective search space used:   195510
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)