BAC Information

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BAC

Clone NameMSMg01-101P06
Chromosome7 (Build37)
Map Location 146,921,058 - 146,921,236
singlet/doubletsinglet
Overlap genenone
Upstream geneMapk1ip1, Ppp2r2d, Bnip3, EG668784, LOC669185, 6330417G02Rik, Dpysl4, Stk32c, LOC100038956, Lrrc27, Pwwp2, Inpp5a, Nkx6-2, E030019B06Rik, 9330101J02Rik, LOC100043472, EG434253
Downstream geneEG664869, Gpr123, LOC244229, Kndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101P06.T7 (MSMg01no101_p06.b1)MSMg01-101P06.TJ (MSMg01no101_p06.g1)
ACCAG317230AG317231
length724737
length of high quality
(start - end)
241 (72 - 312)178 (76 - 253)
definitionCHROMAT_FILE: MSMg01no101_p06.b1 PHD_FILE: MSMg01no101_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:22 2005CHROMAT_FILE: MSMg01no101_p06.g1 PHD_FILE: MSMg01no101_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXCTANATCGTGCAGGGCGGCGGAA
TTCATATATATTTCAAAAAGACCCTCTTGGCGAAGTGAAATTTCTGGTTT
TGTTAACAACTCCAGTTGCGTCACGTGATGGTTTTTCTGGACATTGTCTT
GTGAGAGGGCATGGGGTGTTTCGCTGCGAACAGACCCTTGAGAGAGTGTG
TGATGTTTAGGAAGAATATAAATGGAACCCCACAAACAATAAGAGGATGC
TCTTGCATTTGCTATGCAACGCTTCGCTGGTCCTTGCTGATCTTCCCTGG
TCTTCACTTTGCAGAGAGTTTTTTTTCAAAGAACTTCTCGTGGTATTCTG
GCTGCTTCTGGCTGCCTCCACAGACTCATGCGCACCTTGCTGGTTCTGCT
GGTTCGTGTCACTGCTACAGATTCCTGTTTGGTGTTGACTATTGACCTGG
ACTGTTGGTATCCTGACTACAAAGAGGAAAATTGCCCCAAGGAACTGCTT
CTAAGCAGGTCCCCATCATCCATTTCCAATTAACCTTCTTTCCCTACCTC
TGGCCAGCGAATTAGAAGGGATGTTAAAGGATTTAAGAACCCTAAATAAA
GTAGGTTTTTGAAAAACACTAATCCTACATCGAAGTGACGCAGGTGACGA
TGACCCATAGACTCTGATGATCCGTTTTCTGAGGTGGTGGCTGCCCTCAC
TGTCTCCAACGATAAAGAGGTCAA
CGATGCACTGCGAGGCCTGGCGGCCGCCTGGTTTCAAAATGGAGGNGACC
TATAGAAGTTTCCTGAAAATATTTAGAACACAGCCCCTGGCATTAAATAT
TTGGGCTTTGCAATTATGGCCAAATGATTTTGGGAGCTCATAACCAAGTC
AGTAGTTTGAGGTTTAAATGTGACGCGTTAATCACAGCCTTCCATATGGC
CTAACGGGAGACTGGCATTTTCTTTTTGCCAATGACTGACTAAAACACTT
TCTGCATTCTGCAACAATGAAGGCCTCTCCACCAGGGTTTCCGAGCCATT
GTCTCTTCCTCAGATGGTCTTGTTGTTCTGCTCCAGAGGCTATGATAAGA
TCCCGTTCTGATGACCGCCCCGCTCCGAGCTCAGCCTAGGGACCTTGGCA
GACCCCTCTCCACCAAGATGTACATAATTATATGCACGGGCTGCATGTCA
TCTTACCCTGCTACCTAACATTTGCATCCTAAGCCTTCCTACGGTAAACC
TCTGGCTCGACATTTTCTTATATTCCCCTCTCGCCTAGATCTTTCTTATT
CGTTCTTAAATCACCTTCCGAGACCTTCTTCTCTTCTTTCCATCACTCCC
TATCCTCTTTCCTGCTCCCATCACACATTTCGTATTCGTCCGTGTTCTAT
CGGTTTTTATAAGTTCTTGCCATCTTCTTACGATATCCTTGCCACTACTC
TGGCGTTTCTCAACACCTCTAACCTCTGGAGGCCGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_p06.g1 MSMg01no101_p06.g1 CHROMAT_FILE:
MSMg01no101_p06.g1 PHD_FILE: MSMg01no101_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:22 2005
         (178 letters)



>mm_chr7_146920858_146921434
          Length = 577

 Score =  298 bits (154), Expect = 1e-85
 Identities = 173/180 (96%), Gaps = 3/180 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaacacagcccctggcattaaatatttgggctttgcaattatggccaaatgattttggga 60
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 201 gaacacagcccctggcattaaatatttgggctttgcaattatggggaaatgattttggga 260

                                                                       
Query: 61  gctcataaccaagtcagtagtttgaggtttaaatgtgacgcgttaatcacagccttccat 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 gcttataaccaagtcagtagtttgaggtttaaatgtgacgcgttaatcacacccttccat 320

                                                                       
Query: 121 atggcctaacgggagactggcattttctttttgccaatgactgactaaaacac--tttct 178
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 321 atggcctaacgg-agactggcattttctttttgccaatgactgactaaaacacactttct 379


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 577
Length adjustment: 8
Effective length of query: 170
Effective length of database: 569
Effective search space:    96730
Effective search space used:    96730
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)