BAC Information

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BAC

Clone NameMSMg01-102E02
Chromosome7 (Build37)
Map Location 11,175,574 - 11,176,001
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9
Downstream geneV1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102E02.T7 (MSMg01no102_e02.b1)MSMg01-102E02.TJ (MSMg01no102_e02.g1)
ACCAG317452AG317453
length683674
length of high quality
(start - end)
431 (71 - 501)516 (74 - 589)
definitionCHROMAT_FILE: MSMg01no102_e02.b1 PHD_FILE: MSMg01no102_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:47 2005CHROMAT_FILE: MSMg01no102_e02.g1 PHD_FILE: MSMg01no102_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAAT
TCCAATGCTTACCCTGATATCATGTTTTTCCTTTTACTTTGACATCAATA
GATAGATATACTTTTCAGATTTGCCAGTCTCTACTACTACTCTGCTTAGT
ACATTAAAATGGGACTGGCTATGAGTTTGAATCACAAGGAAAAAGTTGAA
GACAACTAAGAACAATGCTAATATTCTGTAAGTTATTATAACTGAATCAT
AGAACAGCAGAAAAAAAAATCAAGGCGATGTACACATAGAAGCTTCATCC
ATTCTCAGTACTGTCCACAGTGCTACAAGTAATTGTACATCTTACCCAGG
TGTGAACCCTGAGAGCTAAAAAAATAATTACCCTGCTATAATACTGCCAT
GACCATCCTGTGATTAACTAACAGTTTTTTGAATATTTGAAGACACACTT
CACAAGACGGAACACTTGCCTTGCCCTATATTTAGAGTAAAGAATATGTA
GCTGGAGTGCATATAGACCCTGTGTTAATCCCAGGGAATGATAGTAAAGT
CCAACAACCCAGTTATTGACTGAATAAGTAAGCTTCACCACTTTACACAG
AAAAGCTGATCAAAAGTCTGTCTTCAAAAACATGAGACTCAGGAGTACTG
ACATGACTTAACTTTCTAGGCTCCTTTCATACC
NTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTCTGTTAGCCTGTGTCTTTTTATTG
AGGATTTGAGTCCCTTTATGAGATATTAAAGACAGATAATTGTTAGTTCC
TGTTATTTTTGTTTCTGGAAGTGCTATTATGTGTGTATGATTTTATGCTT
TTGGGTTTGTTATGAATTGTTTAATTTCTTGTGTTTTCTTTGGTGTAGTT
ACACTACTGTGCTGGAGATTTCATTCCAGTGTCCTCTGTCAGGCTGGATT
AGTAGTAAGATATTGTCAGCCACCAAACGTAGACACTATTGCATATGCCA
GAAATATTTTGCTGAAGGATCCCTGTTATAGCTGTCTCATATGAGGCTAT
GCCAGTGCCTGCCAAATACAGAAGTGGATGCTCACAGTCATCTATAAAAT
GGAACACAGGGCCCCAATGGAGAAAAAAAAGCTAGAGAAAGCACCCAAAG
AGCTGAAGGGGTCTGCAACCCTATAGGTGGAATAACAATATGAACTAAAC
AGTACCCCCGAGCTCATATCTCTAGCTGCATATGTAGCAGAAGATGGCCT
ACTTGGCCATCACTGGGAAGAGAGGCCCCTTGGTCTTGCAAACTTTATAT
GCCTCAGTGCAGGGGAACACTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_e02.b1 MSMg01no102_e02.b1 CHROMAT_FILE:
MSMg01no102_e02.b1 PHD_FILE: MSMg01no102_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:47 2005
         (431 letters)



>mm_chr7_11175374_11176203
          Length = 830

 Score =  814 bits (421), Expect = 0.0
 Identities = 427/429 (99%), Gaps = 1/429 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgtttttccttttactttgacatcaatagatagatatacttttcagatttgccagtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 catgtttttccttttactttgacatcaatagatagatatacttttcagatttgccagtct 569

                                                                       
Query: 61  ctactactactctgcttagtacattaaaatgggactggctatgagtttgaatcacaagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ctactactactctgcttagtacattaaaatgggactggctatgagtttgaatcacaagga 509

                                                                       
Query: 121 aaaagttgaagacaactaagaacaatgctaatattctgtaagttattataactgaatcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aaaagttgaagacaactaagaacaatgctaatattctgtaagttattataactgaatcat 449

                                                                       
Query: 181 agaacagcagaaaaaaaaatcaaggcgatgtacacatagaagcttcatccattctcagta 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 agaacagcag-aaaaaaaatcaaggcgatgtacacatagaagcttcatccattctcagta 390

                                                                       
Query: 241 ctgtccacagtgctacaagtaattgtacatcttacccaggtgtgaaccctgagagctaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ctgtccacagtgctacaagtaattgtacatcttacccaggtgtgaaccctgagagctaaa 330

                                                                       
Query: 301 aaaataattaccctgctataatactgccatgaccatcctgtgattaactaacagtttttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aaaataattaccctgctataatactgccatgaccatcctgtgattaactaacagtttttt 270

                                                                       
Query: 361 gaatatttgaagacacacttcacaagacggaacacttgccttgccctatatttagagtaa 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gaagatttgaagacacacttcacaagacggaacacttgccttgccctatatttagagtaa 210

                    
Query: 421 agaatatgt 429
           |||||||||
Sbjct: 209 agaatatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 830
Length adjustment: 9
Effective length of query: 422
Effective length of database: 821
Effective search space:   346462
Effective search space used:   346462
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)