BAC Information

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BAC

Clone NameMSMg01-105J12
Chromosome7 (Build37)
Map Location 100,323,167 - 100,323,336
singlet/doubletsinglet
Overlap genenone
Upstream geneDlg2, Ccdc90b, Ankrd42, Pcf11, LOC676240, LOC100040007, 4632427E13Rik, Rab30, 4632434I11Rik, Prcp, A830059I20Rik
Downstream geneLOC100040298, LOC666783, EG638305
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105J12.T7 (MSMg01no105_j12.b1)MSMg01-105J12.TJ (MSMg01no105_j12.g1)
ACCAG319906AG319907
length693713
length of high quality
(start - end)
478 (70 - 547)168 (140 - 307)
definitionCHROMAT_FILE: MSMg01no105_j12.b1 PHD_FILE: MSMg01no105_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:16 2005CHROMAT_FILE: MSMg01no105_j12.g1 PHD_FILE: MSMg01no105_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATAATTTGCGGCGCTAAACGACTCCTATTCGAAGAGGACCGCGGAATT
CTTTGTTTCCTCTGAGCCCAATTTTTAATGGGGCTATTTGATTTTCTGGA
GTTCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTG
ATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGACTTTTTGTC
TTATTGACTGTGTCTTTTGCCTTACAGAAGCTTTGCAGTTTCATGAGGTC
CCATTTGTTGATTCTCGATCTTACAGCACAAGCCAATGCTGTTCTATTCA
GGAATTTTTCCCCTGTGCCCATATCTTCGAGGCTTTTCCCTACTTTCTCC
TCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAATCCACTT
AGTTTGACCTTAGTACAAGAATATAGGAATGGATCAATTTACATTCTTCT
ACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTT
TCTTCCACTGGATGGTTTTAGTTCCCTTGTCAAAGATCAAGTGACCATAT
GTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCACTGGTCTACTTG
CCTGTCGCTAGATTAGTACCATGCAGCTTTTATTCACAACGCCTCTGTAG
TAATTTCATGGTGATTCCCCTAGAGGCTCTTTTATCCTTGAGA
CATGCTGTTGTTGTTCGATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGGTTAATAGA
AAATACAGAAAGCAACAGAATGCTTAATATGGGCGACGAATGCTGTCTTT
GGATATGTAGAGCATTAGTAATTTGTCAATGTTCTCTAACCTGACTTGCA
GATTTAAAAGAACTGTCATGAATGAATTAATCAAAGATTTTTTTTTTCTG
AATGCTACATTTGAGTGTGTTACCTGGGTACTAAACAGCATGAATGAATC
ATTGGTAAGTGTGGGGAGTGCCTGACAGATTATTAGCATGAGAAAGGGTA
AAGATGAGAAAAAGGTATAGGTAATGACAATAATTTCTGCATTACTGGAT
AAAAATGAATAAATCCATAGGGAATGGCATAAGGTATATTGTACCAGAAC
ACAGAGGGTCTTGCCTGCCCAAGTTAGTGATAATGGACTTCCCTTTATGG
GAAATGGAGAACAATTTGATCCCTAATGACTATTGCAGTCAATCAGGCAT
TTGAGTAAACCATATGCATTCCTAATTTTTTATAACCCCACCACATATTA
CTTTTGAAAATGATTTGACCTTTCTAATTTGCTTTTCCATCCCTAACGAG
AACCATACCGTCTTATGAAAATTTGTGCACACCTCGAACCATTACCTCTT
TCATGCGCTGTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_j12.g1 MSMg01no105_j12.g1 CHROMAT_FILE:
MSMg01no105_j12.g1 PHD_FILE: MSMg01no105_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:16 2005
         (168 letters)



>mm_chr7_100322967_100323538
          Length = 572

 Score =  271 bits (140), Expect = 2e-77
 Identities = 161/170 (94%), Gaps = 4/170 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgctgtctttggatatgtagagcattagtaatttgtcaatgttctctaacctgacttgc 60
           |||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 370 atgccgtctttggatatgtatagcattggtaatttgtcaatgttctctaacctgacttgc 311

                                                                       
Query: 61  agatttaaaagaactgtcatgaatgaattaatcaaagatt----ttttttttctgaatgc 116
           |||||||||||||||| ||||||||||||| |||||||||    ||||||||||||||||
Sbjct: 310 agatttaaaagaactgacatgaatgaattagtcaaagattctttttttttttctgaatgc 251

                                                             
Query: 117 tacatttgagtgtgttacctgggtactaaacagcatgaatgaatcattgg 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tacatttgagtgtgttacctgggtactaaacagcatgaatgaatcattgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 572
Length adjustment: 8
Effective length of query: 160
Effective length of database: 564
Effective search space:    90240
Effective search space used:    90240
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)