BAC Information

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BAC

Clone NameMSMg01-106B08
Chromosome7 (Build37)
Map Location 112,040,369 - 112,041,041
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665
Downstream geneOlfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp, Smpd1, Apbb1, Hpxn, Trim3, Arfip2, Fxc1, Dnhd1, LOC100042811, LOC672646, 1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106B08.T7 (MSMg01no106_b08.b1)MSMg01-106B08.TJ (MSMg01no106_b08.g1)
ACCAG320264AG320265
length1,2441,261
length of high quality
(start - end)		670 (88 - 757)274 (137 - 410)
definitionCHROMAT_FILE: MSMg01no106_b08.b1 PHD_FILE: MSMg01no106_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:00 2005CHROMAT_FILE: MSMg01no106_b08.g1 PHD_FILE: MSMg01no106_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCGATTTTTTTNNNGTTCACTGGGCGCTAXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTGCAAGTGAAATTATCCTTTATTCTTTATAAGGAA
TGCTCTGCCAAAGTATAGGATCCATAAATTGAATGCAATATACTCATTCT
ATAAAAACTCTTTTTGTGTGTACAGAATTCTGTATGAGTAGAAAAGTAAA
GAAATGATGTATGGAGACTAAATCTTGTTAGTGTTTAGAAGACAAACTTG
CAGTAATTTGAGACAACCTGTCTTCTCTGTTAAAGATAAACTCTTACATC
AAATATGTTGCTGATGTAGGGAAAAAGGAGGTTTAGTGCTTCAATGTGTA
TGTATGTATGCATATGTATGTAAGGCATTTTTTATATTTTATGGAATATC
TCAATTATAGTGATTTGTTTGCCTTATAAGTACACTCTATTTTTAAATGT
CTGTTCTTCCTCAAATGTTCAGTTTTTAAGTACCATTAAAACTGGTTTTA
TGAAATGCAATTGTTTTGTTGGTTAAGAAGGTTATATCATCAGATTTCTA
TGGTATTTGATATTATTTCACTCATTCTTGATTTAAATACAATTGACTAA
TACTATTAGCTTTATACTGGGTTTAATTTGAGGGACACAGAGTAGAATTT
CCAAAAATGTGTCAAAGGGCAATGAGAATAGACACACTGGTGAAGGAAAC
ATGAAAAGAAATGTGTATGAAAAACAAGAGGATATGATTAAAAATAGATG
CTGTCTGTAAGACGGACATCTTAGTAGACAATTAATGGAATGCTTTATTG
GTCTTGGATTGAGTTTGTCTGAAGATTAATATGCTTAATTTCTAAGGATT
AAACCTTGTTGTGTTAATGAATTTCTGAATTCTATTAAATTTAATTTTTA
TACTTTTTTTTTCAAATAAACAATTGGTTTACGAACAATATATTCCAAAT
AATTCCCGTTTTTAAGAAATGGGATTAACATGGTTTTCTAGTATTTTTAT
AATCATTTAATAAAATTATGTTATTTTTTTAATAAGCTGTCACTTTTCTA
ACTCAAAATTAATTCTTGAACATTCACTCCCTCAACAAAAAAGTTTGGGA
GATTCCATGGGGTTGTGGTTTTCCACCGTGCTTTTTTTCTCCAATCTAGT
GCTTGTAATAGGGCTCTAAAAATGCTTTTAATTTTTAATTTAAAATATTT
TTTTCCTAACNTATATTATTTCTTTGATCACAAATCCCCTCTTC

NNCCGAGTTTTTTTNAGCGCATGCGAGCCTGGGGXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAAAAGCCCTAAGAAA
CCTTTATCCTGATTGATTGGCCCTTTTTCCAGGCGTATGGGTGTCTCTGA
GATTGGCTAGGGCTCTAGGGATATTCTAGGGAGAGCCTAGAATCTATTGC
TGACTCTTCCTGACTGTTTTTGCCTCAGGCCAGATGACTAGGCAACCCTT
GATTGACTGACCATAGACTGTGGTGTTTTTTTCTGGAACTGGTTTATTCT
GTTCTGGGAAACAGAATCTTAGATCTAGTCTTGAATTGTCATTTTGCAGC
CTGCCATGGAGTCAGTCTAACTCCAGCCTCTCAAAGATAATATCAGTTCA
AATTCCAAAAATATTTATTTAAGTTTTATAACCAACAGAAAAACTTTCTT
TTACGTTATAAAAAGCTTCTGTAAGACTCTGACAAGCCTTAACTTACCAG
AGTCCCCCTGAGTGAACAATGTGGAGTGGACAATTTAGGCCAAAGCAAGA
AGAATTTTGTTGTTCCAGCATGCTGAGAGTTGCCCTGCACACTAAGGGGA
GATAATGACCATGGGCAGCTTGTTCACTGAGTTTTATACCAGTTTTCAGA
GCATCATCCATTACGCCCAATGTGATTGATAGAACAGCGTGACTTTTAAC
CTGATTGGTTTTTAGGGCATAAGGTGGCCAACACTTGCCTCTTAGGTGGC
CAACAGTCTGTCCACCCTTGCCAGAATGTGTCTACTTGCTCTGGTTATTC
CCCCTCCCACCGGTGGCTGATGGTCCCCCCACCCACTCCGTGGTCTGAGG
AAAGCTAATTTGCCTTTCCCTTCCCTAAGTGGTTGCTGGTGCCTCCATTG
CTCTACGACTCTTTTTCTTTCAGTTATAAAATCGTTTCTTGGTGTTATTT
TTCCCTAAGTTTCTGGTTCGGGTCTTCTCTCCCTCCTGTATTTTTAATAA
GGGATTCCTGTCGGTCCCCCTGTGTGTGTTTTACCCCCTTCTGTTTCCAA
TTAATGTGGGGGGTCACCACCATTTTTGTTCTTTGGAACTATTTTTTTCC
TTGGGCGCGTAATTACAGATAAGTTCCCCTGTTAACCCAACTCATTCCTC
TCTTTCAGGGGAGATTATTATTTCTTTTCTCCAACATCTTATATTCGTTT
ATCTTAGGCAACAGCAATTCACCCTCGTGCGTGGTTATCTCTATTCGATC
TATCCCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_b08.b1 MSMg01no106_b08.b1 CHROMAT_FILE:
MSMg01no106_b08.b1 PHD_FILE: MSMg01no106_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:00 2005
         (670 letters)



>mm_chr7_112040169_112041241
          Length = 1073

 Score = 1255 bits (649), Expect = 0.0
 Identities = 666/673 (98%), Gaps = 3/673 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttataaggaatgctctgccaaagtataggatccataaattgaatgcaatatactcat 60
           ||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||
Sbjct: 873 tctttataaggaatgctctgccaaagtataggatgtagaaattgaatgcaatatactcat 814

                                                                       
Query: 61  tctataaaaactctttttgtgtgtacagaattctgtatgagtagaaaagtaaagaaatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 tctataaaaactctttttgtgtgtacagaattctgtatgagtagaaaagtaaagaaatga 754

                                                                       
Query: 121 tgtatggagactaaatcttgttagtgtttagaagacaaacttgcagtaatttgagacaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 tgtatggagactaaatcttgttagtgtttagaagacaaacttgcagtaatttgagacaac 694

                                                                       
Query: 181 ctgtcttctctgttaaagataaactcttacatcaaatatgttgctgatgtagggaaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ctgtcttctctgttaaagataaactcttacatcaaatatgttgctgatgtagggaaaaag 634

                                                                       
Query: 241 gaggtttagtgcttcaatgtgtatgtatgtatgcatatgtatgtaaggcattttttatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gaggtttagtgcttcaatgtgtatgtatgtatgcatatgtatgtaaggcattttttatat 574

                                                                       
Query: 301 tttatggaatatctcaattatagtgatttgtttgccttataagtacactctatttttaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tttatggaatatctcaattatagtgatttgtttgccttataagtacactctatttttaaa 514

                                                                       
Query: 361 tgtctgttcttcctcaaatgttcagtttttaagtaccattaaaactggttttatgaaatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tgtctgttcttcctcaaatgttcagtttttaagtaccattaaaactggttttatgaaatg 454

                                                                       
Query: 421 caattgttttgttggttaagaaggttatatcatcagatttctatggtatttgatattatt 480
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 453 caattgttttgttggttaagaaggttatatcatcagattcctatggtatttgatattatt 394

                                                                       
Query: 481 tcactcattcttgatt---taaatacaattgactaatactattagctttatactgggttt 537
           ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tcactcattcttgatttactaaatacaattgactaatactattagctttatactgggttt 334

                                                                       
Query: 538 aatttgagggacacagagtagaatttccaaaaatgtgtcaaagggcaatgagaatagaca 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aatttgagggacacagagtagaatttccaaaaatgtgtcaaagggcaatgagaatagaca 274

                                                                       
Query: 598 cactggtgaaggaaacatgaaaagaaatgtgtatgaaaaacaagaggatatgattaaaaa 657
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cactggtgaaggaaacatgaaaagaaatgtgtatgaaaaacaagaggatatgattaaaaa 214

                        
Query: 658 tagatgctgtctg 670
           |||||||||||||
Sbjct: 213 tagatgctgtctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1073
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1063
Effective search space:   701580
Effective search space used:   701580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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