BAC Information

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BAC

Clone NameMSMg01-108L04
Chromosome7 (Build37)
Map Location 138,954,086 - 138,954,483
singlet/doubletsinglet
Overlap genenone
Upstream geneBtbd16, EG434249, Plekha1, Htra1, Dmbt1, 4933402N03Rik, 5430419D17Rik, LOC546006, LOC100043173, Cuzd1, 1700007K09Rik, 1700063I17Rik, 2310057M21Rik, Pstk, Ikzf5, Acadsb, Hmx3, Hmx2, Bub3, LOC677073, LOC100043679
Downstream geneGpr26, Cpxm2, 4631426J05Rik, LOC100043682, LOC100043683, Oat, Nkx1-2, 2310007H09Rik, A930008G19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108L04.T7 (MSMg01no108_l04.b1)MSMg01-108L04.TJ (MSMg01no108_l04.g1)
ACCAG322076AG322077
length732699
length of high quality
(start - end)
69 (190 - 258)409 (83 - 491)
definitionCHROMAT_FILE: MSMg01no108_l04.b1 PHD_FILE: MSMg01no108_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:38 2005CHROMAT_FILE: MSMg01no108_l04.g1 PHD_FILE: MSMg01no108_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTCAGAGAATCCGCG
GAATTCTTAATTTTGCCTCTTGACCATCCCCTGAGATCTTGACAGTTGTG
TCCCTGACATCTTTTTCTTTATTTCTTGGCCTTGGATTCAGTTTCTACCT
GAGCTAGTCTACTACCATTGCTTTCTACTGAGTTTTGCATTTGACTGACT
AAATTAATTTCTAGCATCTATGTGATTTTTTTCTCTTTCAGAATCTCTAT
TTACTTGACCAATTTCTCATCTATGTTATTGACTTTCCGATCCCTCATTT
GAATTCCTTTCATTTTTTTCTTTCTCCTCTTTTCAGCCATATTTCCTGAC
ACCATAACACATGTACTCGCGTGCGCGCACATACCTACATACACGATCTT
ATACTCTCATACTTTCACATATATATATGTGTTGTGATACCGCGCTCTGG
CCTGAATTTCCGTTTTCACTTCTTCTATCCGATTATCTGAATCCCCCTTT
GGTCTAATGATCTTTTGATCTTTTTTCCTCCCTCCTTAGCCTTCACTTAT
TTACTCTTCTCTTAAGTCCCCTCCCCCCTGTACTTTACTTTACATATCTT
TATACTTACATTACAATATTCTTATCCCCTACTTCCCCTTCCCACTACTC
CCCACCCTTTCCCTATTCATCTTTTCTCATTCTCCTACACCTACTCTCAT
CCCTATATATCCCCTTCCCCCCTTCTACTTTT
TCTTTTNTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTAAAAGTGAGTTGAC
CTAATGTTTGCATAGCAAAATTTATCACCTTAAAATTGATTTTTATCTTA
TGAACACACCTAAGACAAAAAAACAAAGTGTGTTCGCAGAGAACAAAGAC
CACTTACCTTTGACTTTGCGATAAGCAAACCTTCTAACTATAAAGTAGCG
TTTCTCAATCCTTTACATCTCCCGGGGGGTCCGGTCCAGCTATTCATCAA
AACCACCTGGGAGGCTTAGTGAAAAGCATGGACTCCTAGACCCCCAAGCA
GGGCCTTCTGGACTCAGAATCTGCAAGAATGGGGCTCAGAAACACACATC
CCAGAACTGTCCCTGGATGACCCACATGCAGCAACATGACACTGGCTCAA
TGACCATAGGAAGAACACTGTGAGAATCAAGGACTGTTCTGGAGTAGTTG
CCCCAGGGGAGGGCTTCTGCCCCGCACTGGCCCAGCCACATAGGTAAGAA
TAACGCACGGGGCTCGGGGGGAGTTGAGAGGGAGAAAATGCTATCCGCTG
TCCAAACAGCCAGTTTCGTTTCCCCTCCTATATGGGAAAGTTAAGCATCA
TTTACAAATCCCACTTCCCTTAGTAACTGCCCAGAGAATCCAGTGCGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_l04.g1 MSMg01no108_l04.g1 CHROMAT_FILE:
MSMg01no108_l04.g1 PHD_FILE: MSMg01no108_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:38 2005
         (409 letters)



>mm_chr7_138954086_138954894
          Length = 809

 Score =  716 bits (370), Expect = 0.0
 Identities = 391/398 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttaaaagtgagttgacctaatgtttgcatagcaaaatttatcaccttaaaattgattt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 398 ttttaaaagtgagttgacctaatgtttgcatagcaaaatttatcaccttaaagttgattt 339

                                                                       
Query: 61  ttatcttatgaacacacctaagacaaaaaaacaaagtgtgttcgcagagaacaaagacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ttatcttatgaacacacctaagacaaaaaaacaaagtgtgttcgcagagaacaaagacca 279

                                                                       
Query: 121 cttacctttgactttgcgataagcaaaccttctaactataaagtagcgtttctcaatcct 180
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 278 cttacctttggctttgcgataagcaaaccttctaactataaagtagcgtttctcagccct 219

                                                                       
Query: 181 ttacatctcccggggggtccggtccagctattcatcaaaaccacctgggaggcttagtga 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 218 ttacatctcccggggggtccggtctagctattcatcaaaaccacctgggaggcttagtga 159

                                                                       
Query: 241 aaagcatggactcctagacccccaagcagggccttctggactcagaatctgcaagaatgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 158 aaagcatggactcctagacccccaagcagggccttctggactcagaatctgcatgaatgg 99

                                                                       
Query: 301 ggctcagaaacacacatcccagaactgtccctggatgacccacatgcagcaacatgacac 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  ggttcagaaacacacatcccagaactgtccctggatgacccacatgcagcaacatgacac 39

                                                 
Query: 361 tggctcaatgaccataggaagaacactgtgagaatcaa 398
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 38  tggctcaatgaccataggaagaacactgtgagaatcaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)