BAC Information

Click to search

BAC

Clone NameMSMg01-109I18
Chromosome7 (Build37)
Map Location 91,894,367 - 91,894,764
singlet/doubletsinglet
Overlap gene2610206C17Rik
Upstream geneLOC666170, 1700026D08Rik, Mesdc1, Mesdc2, 9930013L23Rik, 2210412D01Rik, Arnt2, LOC100039239, Fah, Zfand6
Downstream geneEG620480, Olfr291, LOC666276, Olfr290, ENSMUSG00000070600, F830104D24Rik, LOC620641, EG620672, Vmn2r-ps68, EG620697, Vmn2r-ps69, LOC330581, LOC100039339, Vmn2r70, Vmn2r-ps72, EG233445, Vmn2r-ps74, EG244114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109I18.T7 (MSMg01no109_i18.b1)MSMg01-109I18.TJ (MSMg01no109_i18.g1)
ACCAG322705AG322706
length723779
length of high quality
(start - end)
398 (92 - 489)---
definitionCHROMAT_FILE: MSMg01no109_i18.b1 PHD_FILE: MSMg01no109_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:49 2005CHROMAT_FILE: MSMg01no109_i18.g1 PHD_FILE: MSMg01no109_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCCTAGTCTCCNCTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCGCGGAATTCTGTACCTTTCAAGACACCAGCATGGG
AAGATCAGACTAGCTCTACCCTGAAATCCAGGCAGGCCATCAGGACAGAG
GAGCAGACACAAAGGGATCCACGCCTCTGTAACCCAGGGACCAACAACCA
AGGAGCCTTATTACAGAGGTCCTGTTTTCAGTGGTTCCTTGCCTGTCTCT
TGTCTTGGAGCATAGTATAGAGAAAAGCCTGCATACTGAAGCCGGAGAAC
CATTCTCATACCAAAGGAGTATTGGGAAGGAGGAGCACTGTGGCTTATGT
ACCCAAAAGACAAATGGTCACTGAGATAGAACTTCCTGCTTCCTGCTACA
TGTTCCTGCATTAGCTCACCTGTCAGCATGTTCGAGGGATATTTGCCTTC
CTTTCTTTGTTTTTATTACATCTTCTTACTGAATAGGAGGAGGTCTCCCA
AGATTGCTAGCTAGTCCAAGCACTTAGTTATAAAGAGTTAGGTGTGGAGA
GGGAGGAGGGATGAAAAAAAGCCACCTGGACTGCCTTAGGCATTTGCCAC
CTTGTTTGACACTGCCCTCTCAAAGCTAGGGGAAACCTCTGTAAACCATC
TGACATTTCCAAATTTGAAACAACTGGTATCTGTCCTTACTGTGACATTC
GCCCCACCTTGAAACCGACCATA
NNCCTCATTNTNNNNNNNNNNNNNNNNNNNNTTTTCCAAAANNNNNNNNN
NNNNNNNNNNTTCCCCNNNNTTNNNNCTCCTNTNNNNNNNNNNNNTNNNN
NNNNNNNNNNNNNNNNTNNNNNNTTTTTTTTTTTTTTTTNCTNNNCTNNN
NCTTTCNCTTTCTTCCCTTTTTTCTCTTTTNTCTNNNTTTTTTTTTTTCT
TTCTTTTCCTTTNNNTNCTTCCCTTACAACAAAACAAAAACAGGCTGTGG
GGGGNNNNNNNCNNNTTTNCCNTNCATAGAAGAGAGAAAGAAGCTCTTTT
NNTNTNTNNTTTTTNNCTCCCCCCGAGAAAAGAACAAACGTAAACNNCTC
CTTCCCTCCACACCCAGCGTTTNNCCGAAAANCCCTCTNCNNNNNNNNTT
TNTNTTTCTTCNTCCTCCCCGCCCAGACGGACCTCTTTTNNNNNNNNCNN
CCCNNCCCNCTNTTCCTCCCCCCTCAACAAAAAAAAAAAATCTTNTNNTT
TTTTTNTTTTTTTTTNNNNTNAAATAACAAAACCGAACAAAGAGTCCCCT
TAATGTCTNNTTTTCTCTGCTNTNNNNTNTTTTTTTTTTTTTTTTTCCTT
TTNTNTTTCNCCTTTTTCCTTTCCTCTCTCNTTTTCCTTTTTTTTTTNCC
TCTCCCCTCCCTCTCCCCTTCTCTCCCACACCCCACAACAACGAGTCAGC
TCTTAACTGTNANACTNCTANNTCNCTCNNNNTTTNTTTNTCCCTCTCTC
TTCTTCTTCCCCCCCCCCCCCCCACCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_i18.b1 MSMg01no109_i18.b1 CHROMAT_FILE:
MSMg01no109_i18.b1 PHD_FILE: MSMg01no109_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:49 2005
         (398 letters)



>mm_chr7_91894167_91894964
          Length = 798

 Score =  746 bits (386), Expect = 0.0
 Identities = 395/398 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagcatgggaagatcagactagctctaccctgaaatccaggcaggccatcaggacagagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagcatgggaagatcagactagctctaccctgaaatccaggcaggccatcaggacagagg 260

                                                                       
Query: 61  agcagacacaaagggatccacgcctctgtaacccagggaccaacaaccaaggagccttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcagacacaaagggatccacgcctctgtaacccagggaccaacaaccaaggagccttat 320

                                                                       
Query: 121 tacagaggtcctgttttcagtggttccttgcctgtctcttgtcttggagcatagtataga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacagaggtcctgttttcagtggttccttgcctgtctcttgtcttggagcatagtataga 380

                                                                       
Query: 181 gaaaagcctgcatactgaagccggagaaccattctcataccaaaggagtattgggaagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaaagcctgcatactgaagccggagaaccattctcataccaaaggagtattgggaagga 440

                                                                       
Query: 241 ggagcactgtggcttatgtacccaaaagacaaatggtcactgagatagaacttcctgctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagcactgtggcttatgtacccaaaagacaaatggtcactgagatagaacttcctgctt 500

                                                                       
Query: 301 cctgctacatgttcctgcattagctcacctgtcagcatgttcgagggatatttgccttcc 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 501 cctgttacatgttcctgcattagctcacctgtcagcatgttcgagggatatttgttttcc 560

                                                 
Query: 361 tttctttgtttttattacatcttcttactgaataggag 398
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttctttgtttttattacatcttcttactgaataggag 598


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space:   306921
Effective search space used:   306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)