BAC Information

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BAC

Clone NameMSMg01-110L21
Chromosome7 (Build37)
Map Location 130,861,272 - 130,861,810
singlet/doubletsinglet
Overlap genenone
Upstream geneCacng3, 4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981, Tnrc6a, Slc5a11, Arhgap17, Lcmt1, Aqp8, Zkscan2, LOC100043482
Downstream geneEG628779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110L21.T7 (MSMg01no110_l21.b1)MSMg01-110L21.TJ (MSMg01no110_l21.g1)
ACCAG323591AG323592
length1,203690
length of high quality
(start - end)		---539 (76 - 614)
definitionCHROMAT_FILE: MSMg01no110_l21.b1 PHD_FILE: MSMg01no110_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:25 2005CHROMAT_FILE: MSMg01no110_l21.g1 PHD_FILE: MSMg01no110_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTTGGTTTNTTTTTTNNTTTTTTTGCCGCGGCGCGNGGGATCG
CGGNTGGTGGNNCTTTCTCCTTGAGTGTTGCCCTTGATGTGTTCCCGCCG
GTCCGCCGCCTGGCGCCGCGCCGGTCGCTGCGGTGTTCCGCCCCGCGCCC
GTCCCGGCTGCCCCCTGGTGNTTTTGTATTATTGATTGAAGGCATCGGCA
AAGGGTAGGAGTGTGAAACCGAAATAAAAGGCGAAAAACAATGAAGCACT
ACTTCTCATGTTAAACTCTATACTTAAATTGATATTATCTGCACCCCCCC
ACCCGCACCCGCCCTACATCATACTGGTTACCAGCTTCCCTCCCCCTTGG
CATTGCTACNCCGTTATTAATAAGAGGCACCCCCGCCATTATAATGGTAC
ATAACCCGACCCAGCCATACTACGTCACCAACCTGAGTATTGAAGAAAAA
AGAACAGCAGAATAGACCATCGTAATGGACACAGATACGAAGAAACTAAG
GTGTATGACCGCTAGCGACCTACACGCGCTATAGCACACAGCAAGCAACG
GAGATGAAGCGCACGCACNATGAGTCAGATCCTGAGTATGGAGCGCTCAG
ACGCGCACCCGCCAACGCCGAGTATTCAGGACCACGGAGGCCAGACTCCC
AGAGACACTGCAGCAATCCCGTTGCTGGAGCACACGCGCGATCATGCCAT
GCTTCTCGTCCGCGTCGCGGCTGCACTGCTCCACGCACGTTGCGACAGGA
ATGTGATACTCCAACAAAAGTGATAAACGCACTGAGCATCGCAGGCCGAC
GTGGCGGTGAGCTAGTCTCCGCTCGCGCGTGACAGAGTCTGTGAGATGAT
CGAGATAGCCGAAGACGGAGGCGAGCGAGCAGTACCGGCTGGTTGAGACG
GCCGCGCGGATAGTTCCAGCGGCAGCGAAGGAAGTGTGACATCCTCGACG
TCCAACCAGTACAGAGACACGGGAGCGCTGCGGAGCGCGCATGTGCAGAC
GTGACAGATGTAGCATCACGAAGAGCACAGCATAGAGCGATGGGCGCGCA
CGATGAGATAAGAGAGAACGAAGCCGAGCCAGAAGCTGCAGTGAGCAGCG
ATGAGTCAGTGCAGCTGCACACGCGACAGAGCGGAGGCNACGCGGGCGAT
CAATTGTGAGCGTAGCAGACGCAGAGTCCCGACTGACGTAAGCCGCTGAG
ATN

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTTGTTTTTCCTATTTCCTGGTAG
GAGTGCTGAGCGTACAGCTCTGGGCTTCCACGCTCAGCCTTTACACGAGT
CCTGAGGTTTCACACTTGGCTGGCAACTACTTTTCCACACCTTGTCATTT
CCCCCACCCTATGACTGGGGATTCTTGAATTCTGTCCACTGTGATAGATA
TAGAAATCAGTTGCACTGTGGTTTTCATTTTTCTAATGATGTTGGGTATG
TTTTAATATTCTTGACTTATATCTGTGTATTTTCTTTGATAAAATATCTG
TTCAAAAATATTTTTGAGACTAGGTCTTACTATGTCATCCTAGCTGGCCT
AGAACATGGTATGTAGACTAGGCTGGCCTTGGACCAGCCCTCCTCTGTCT
TGCAAATGTCTGGCATAAAGGCATGTGCAACCATACCTTCGTAAAATTTT
ACTTAGTTTTAAACATGAGTCTTTGAAAATTAGGCTTTGAGAATTCTTGA
TATAATCTGTACATAATTTTAACTGAAAACCATATTTTATTTGCAAAAAA
TTTCCCCTTTTTCTTTTCATTCCTCTTAACTATTACTTTTTTTTAAAAAT
TAAAACATAATTTACATCCCTTCAACCTCCCTCTCTAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_l21.g1 MSMg01no110_l21.g1 CHROMAT_FILE:
MSMg01no110_l21.g1 PHD_FILE: MSMg01no110_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:25 2005
         (539 letters)



>mm_chr7_130861072_130862010
          Length = 939

 Score = 1027 bits (531), Expect = 0.0
 Identities = 537/539 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttgtttttcctatttcctggtaggagtgctgagcgtacagctctgggcttccacgctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttgtttttcctatttcctggtaggagtgctgagcgtacagctctgggcttccacgctc 260

                                                                       
Query: 61  agcctttacacgagtcctgaggtttcacacttggctggcaactacttttccacaccttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcctttacacgagtcctgaggtttcacacttggctggcaactacttttccacaccttgt 320

                                                                       
Query: 121 catttcccccaccctatgactggggattcttgaattctgtccactgtgatagatatagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catttcccccaccctatgactggggattcttgaattctgtccactgtgatagatatagaa 380

                                                                       
Query: 181 atcagttgcactgtggttttcatttttctaatgatgttgggtatgttttaatattcttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcagttgcactgtggttttcatttttctaatgatgttgggtatgttttaatattcttga 440

                                                                       
Query: 241 cttatatctgtgtattttctttgataaaatatctgttcaaaaatatttttgagactaggt 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 cttatatctgtgtattttctttgataaaatatctgttcaaaaatgtttttgagactaggt 500

                                                                       
Query: 301 cttactatgtcatcctagctggcctagaacatggtatgtagactaggctggccttggacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttactatgtcatcctagctggcctagaacatggtatgtagactaggctggccttggacc 560

                                                                       
Query: 361 agccctcctctgtcttgcaaatgtctggcataaaggcatgtgcaaccataccttcgtaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agccctcctctgtcttgcaaatgtctggcataaaggcatgtgcaaccataccttcgtaaa 620

                                                                       
Query: 421 attttacttagttttaaacatgagtctttgaaaattaggctttgagaattcttgatataa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attttacttagttttaaacatgagtctttgaaaattaggctttgagaattcttgatataa 680

                                                                      
Query: 481 tctgtacataattttaactgaaaaccatattttatttgcaaaaaatttcccctttttct 539
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctgtacataattttaattgaaaaccatattttatttgcaaaaaatttcccctttttct 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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