BAC Information

Click to search

BAC

Clone NameMSMg01-110P04
Chromosome7 (Build37)
Map Location 96,850,645 - 96,955,240
singlet/doubletdoublet
Overlap geneMe3
Upstream geneEG621562, Tmem135, LOC100039969, Fzd4, Prss23, LOC100040001
Downstream geneCcdc81, l7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83, Sytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik, LOC666689, LOC621816, LOC100039943
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110P04.T7 (MSMg01no110_p04.b1)MSMg01-110P04.TJ (MSMg01no110_p04.g1)
ACCAG323744AG323745
length703703
length of high quality
(start - end)
583 (45 - 627)471 (75 - 545)
definitionCHROMAT_FILE: MSMg01no110_p04.b1 PHD_FILE: MSMg01no110_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:41 2005CHROMAT_FILE: MSMg01no110_p04.g1 PHD_FILE: MSMg01no110_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,954,662 - 96,955,240)(96,850,645 - 96,851,004)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCCAGCAGGTCATCATACTCCTCCCCACGGACACGCTGGTGTTTC
AGGCCGATGTACAGAGGGTCTCTAAGAAGCTCCTGGAATAGAGAGCATCC
ACTTACCAAACCCATTCCATGCTTCCCACTTTGTTATCTTTTCCTGTAAA
GCAAGAGCCCAGGTTTAGTGGGAAGAACTGGAGGTAGGAGGAGAGAAGAG
CACAGGACTCTGCCTCTGTTTCTCTACCTCTACCTAGGGGTAATCCCTGG
AAGAGTCTGGAGGCCAAGTCCCTGTCTGAGGGTGGATTCCTGTGAAATCC
CATTTTTAGGAATGAACAATGCTTTGATGTAGCTGAGCCTCCATCGGACA
CTCTTTCAAGTCCTGGCTGTAGACTTTGGGTTTCTTTCAGGGTTTCTTAA
TAGTGTCACTATGAACACTTTAGCTTGGATTATTCCTTAATTTGAGAGAT
GACCTGAACATTATAGGATATTTAGCAGCATCTCCAACCTATACCCACAA
GGATCCAGCAACACCTCCACTTGTGGCCATAAAAATGTCCCCAGACATTG
CTACAGGTATTCTTGAAGGTAGAAGTGCTCCAGGTTGAGAACCTCTGATA
CTGACTGTAGGTAGCATCTGCCTTGGTGATAGGAGCCCCATCCACAGATC
TTG
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCCTGTCTGGGTTTGAACTCTAGCT
TCTCCTCCTCTGACTTTTTTTTCTTGTCTATCCTATCTATAAAATAGGTC
TACTTTTAAATAAATTTAATTTAAAGGGTTGTTACAAATACTCAAAATAA
TATAGTTAACCAGAGTTGAAAATAGAAAGCATCAATGAAAAGTAATCATT
CTTTGGGAGAAAAACTGACTTCATTTTAACAAAACAAGAAATGTAATATA
TTATAAAAATAAAGGTTGCTGGTTATCAAGGCTAGAAAGGACACAGAAAT
ACCCTCATTCTTTGATAGTGAGCTATTGCTCAAAAAGCTGACCCCACTTC
AACAGGGGTCTTCTATTTAATGTATTAATTTTCTTTTTTTTTCTTTTTTT
ATTACGTATTTTCTTCAATTACATTTCCAATGCTATCCCAAAAGTCCCCC
CCACTCCCCCCCCCACTCCCCTACCCACCCATTCCCATTTTTTGGTCCTG
GAGTTCCCCTGTACTGGGGCATATAAAGTTTGCCTGACCAATGGGCCCTC
TCTTTCCCGTGATGGTCCATTAAGCCCTCTTCTGACCCATACGCACCTAT
ACTCTCCAGCTCTGCCTCCCCGGCTACTCTATACCGCCTTTCCCCCGATA
CAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_p04.b1 MSMg01no110_p04.b1 CHROMAT_FILE:
MSMg01no110_p04.b1 PHD_FILE: MSMg01no110_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:41 2005
         (583 letters)



>mm_chr7_96954648_96955630
          Length = 983

 Score = 1089 bits (563), Expect = 0.0
 Identities = 575/579 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatccagcaggtcatcatactcctccccacggacacgctggtgtttcaggccgat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gaattcatccagcaggtcatcatactcctccccacggacacgctggtgtttcaggccgat 534

                                                                       
Query: 65  gtacagagggtctctaagaagctcctggaatagagagcatccacttaccaaacccattcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gtacagagggtctctaagaagctcctggaatagagagcatccacttaccaaacccattcc 474

                                                                       
Query: 125 atgcttcccactttgttatcttttcctgtaaagcaagagcccaggtttagtgggaagaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 atgcttcccactttgttatcttttcctgtaaagcaagagcccaggtttagtgggaagaac 414

                                                                       
Query: 185 tggaggtaggaggagagaagagcacaggactctgcctctgtttctctacctctacctagg 244
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tggaggcaggaggagagaagagcacaggactctgcctctgtttctctacctctacctagg 354

                                                                       
Query: 245 ggtaatccctggaagagtctggaggccaagtccctgtctgagggtggattcctgtgaaat 304
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 353 ggtaatccctggaagagtctggaggccaagtccctgtctgagggaggattcctgtgaaat 294

                                                                       
Query: 305 cccatttttaggaatgaacaatgctttgatgtagctgagcctccatcggacactctttca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 cccatttttaggaatgaacaatgctttgatgtagctgagcctccatcggacactctttca 234

                                                                       
Query: 365 agtcctggctgtagactttgggtttctttcagggtttcttaatagtgtcactatgaacac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 agtcctggctgtagactttgggtttctttcagggtttcttaatagtgtcactatgaacac 174

                                                                       
Query: 425 tttagcttggattattccttaatttgagagatgacctgaacattataggatatttagcag 484
           |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 173 tttagcttgggttattccttaatctgagagatgacctgaacattataggatatttagcag 114

                                                                       
Query: 485 catctccaacctatacccacaaggatccagcaacacctccacttgtggccataaaaatgt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 catctccaacctatacccacaaggatccagcaacacctccacttgtggccataaaaatgt 54

                                                  
Query: 545 ccccagacattgctacaggtattcttgaaggtagaagtg 583
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 53  ccccagacattgctacaggtattcttgaaggtagaagtg 15


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no110_p04.g1 MSMg01no110_p04.g1 CHROMAT_FILE:
MSMg01no110_p04.g1 PHD_FILE: MSMg01no110_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:42 2005
         (471 letters)



>mm_chr7_96850445_96851315
          Length = 871

 Score =  658 bits (340), Expect = 0.0
 Identities = 355/360 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcctgtctgggtttgaactctagcttctcctcctctgacttttttttcttgtctatcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcctgtctgggtttgaactctagcttctcctcctctgacttttttttcttgtctatcct 260

                                                                       
Query: 61  atctataaaataggtctacttttaaataaatttaatttaaagggttgttacaaatactca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctataaaataggtctacttttaaataaatttaatttaaagggttgttacaaatactca 320

                                                                       
Query: 121 aaataatatagttaaccagagttgaaaatagaaagcatcaatgaaaagtaatcattcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaataatatagttaaccagagttgaaaatagaaagcatcaatgaaaagtaatcattcttt 380

                                                                       
Query: 181 gggagaaaaactgacttcattttaacaaaacaagaaatgtaatatattataaaaataaag 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 gggagaaaaactgacttcattgtaacaaaacaagaaatgtaatatattataaaaatacag 440

                                                                       
Query: 241 gttgctggttatcaaggctagaaaggacacagaaataccctcattctttgatagtgagct 300
           ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| 
Sbjct: 441 gttgccggttatcaaggctagaaaggacgcagaaataccctcattctttgatagtgagcg 500

                                                                       
Query: 301 attgctcaaaaagctgaccccacttcaacaggggtcttctatttaatgtattaattttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attgctcaaaaagctgaccccacttcaacaggggtcttctatttaatgtattaattttct 560


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)