Query= MSMg01no111_a04.b1 MSMg01no111_a04.b1 CHROMAT_FILE:
MSMg01no111_a04.b1 PHD_FILE: MSMg01no111_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:47 2005
(692 letters)
>mm_chr7_104562875_104563966
Length = 1092
Score = 965 bits (499), Expect = 0.0
Identities = 519/533 (97%), Gaps = 13/533 (2%)
Strand = Plus / Minus
Query: 173 ttataaactggcatcagttatagaccaccttgcctaggactgagagactagatttgtacc 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 ttataaactggcatcagttatagaccaccttgcctaggactgagagactagatttgtacc 1033
Query: 233 tctggggtgggtgagatggctcggctggtaaaggcacctgtcaccaagtctgactgacaa 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 tctggggtgggtgagatggctcggctggtaaaggcacctgtcaccaagtctgactgacaa 973
Query: 293 cctgatattgatccctggggctcacatgg----gagagaattgacttctgcaagctgtcc 348
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 972 cctgatattgatccctggggctcacatgggagagagagaattgacttctgcaagctgtcc 913
Query: 349 tcagtcctcca---------tgtggcctgtgcactgcctcccaccccaccccaacataaa 399
||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 tcagtcctccatgtgtgcactgtggcctgtgcactgcctcccaccccaccccaacataaa 853
Query: 400 aagaattgcacctccgtttactagcaaggaaatgaaagttaactgagtgactcatctgaa 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 aagaattgcacctccgtttactagcaaggaaatgaaagttaactgagtgactcatctgaa 793
Query: 460 gtcacattgtaaagggacaaaagccaggtatacggtacatggtatatggtacatggtata 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 gtcacattgtaaagggacaaaagccaggtatacggtacatggtatatggtacatggtata 733
Query: 520 cagtacatggtgtacggtatatggtatatggtacatggtatattatacatggtatatggt 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 cagtacatggtgtacggtatatggtatatggtacatggtatattatacatggtatatggt 673
Query: 580 acttggtatacagtacatggtatatggtatatgatacatgatatatgcccaggaccccca 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 acttggtatacagtacatggtatatggtatatgatacatgatatatgcccaggaccccca 613
Query: 640 ggcagaagcaggattggtagttccaggtcagcctcagaaacccaaacctaagc 692
|||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 612 ggcagaagcaggattggtagttccaggtcagcctcagaaacccaaatctaagc 560
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no111_a04.g1 MSMg01no111_a04.g1 CHROMAT_FILE:
MSMg01no111_a04.g1 PHD_FILE: MSMg01no111_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:47 2005
(736 letters)
>mm_chr7_104368896_104370031
Length = 1136
Score = 1408 bits (728), Expect = 0.0
Identities = 734/736 (99%)
Strand = Plus / Plus
Query: 1 tgatatgggaaggatgttgtaaccataatcgacatggaaaaattgtaggaaaatgagtcc 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 tgatatgggaaggatgttgtaaccataatcgagatggaaaaattgtaggaaaatgagtcc 260
Query: 61 aatggatattagaaggttagattttagaggtaaaaaggagtttagacagtgtcttgtctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatggatattagaaggttagattttagaggtaaaaaggagtttagacagtgtcttgtctg 320
Query: 121 tattcctggctggcctggaactcactgtgtagcccaggctggcctcaaactgtcaagact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattcctggctggcctggaactcactgtgtagcccaggctggcctcaaactgtcaagact 380
Query: 181 cctgtcttagtcatgtgctgagattacaggtgtgagttactctgcctggctgaaagttag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgtcttagtcatgtgctgagattacaggtgtgagttactctgcctggctgaaagttag 440
Query: 241 attttttaacattcttgttttgaaatgcttaatgatgaagagttggatataggactcggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attttttaacattcttgttttgaaatgcttaatgatgaagagttggatataggactcggg 500
Query: 301 ttcagcagatggagctaagctgggggttgactttcaggagttgaagcaattagatggctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcagcagatggagctaagctgggggttgactttcaggagttgaagcaattagatggctt 560
Query: 361 ttgatccaatggtggatatagaaacagactatctgagaactgagcattagagcaatctag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgatccaatggtggatatagaaacagactatctgagaactgagcattagagcaatctag 620
Query: 421 agcttagagaaaaaggagaaggaaagaccagcactggcatcagaaaagcaataccaagtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcttagagaaaaaggagaaggaaagaccagcactggcatcagaaaagcaataccaagtg 680
Query: 481 agaaaatgagagtggatgctaaagcccagtgaagaaagtgtgccactgaaggtagaataa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaaaatgagagtggatgctaaagcccagtgaagaaagtgtgccactgaaggtagaataa 740
Query: 541 tagacctttgtaaactgttcctgatcacagaaagctccaagggttagttagcagtactgc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tagacctttgtaaactgttcctgatcacagaaagctccaagggttagttagcagtactgc 800
Query: 601 agtcttcaagacttttgatacattgtatcggaggtacagtgggaagcagattgatgaagg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agtcttcaagacttttgatacattgtatcggaggtacagtgggaagcagattgatgaagg 860
Query: 661 tgccttcatataggagtagaggaaacaaataagcatagttccataggtagtgcttgaagc 720
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tgccttcatataagagtagaggaaacaaataagcatagttccataggtagtgcttgaagc 920
Query: 721 ttaactgaagagttgg 736
||||||||||||||||
Sbjct: 921 ttaactgaagagttgg 936
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 736
Length of database: 1136
Length adjustment: 10
Effective length of query: 726
Effective length of database: 1126
Effective search space: 817476
Effective search space used: 817476
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
