BAC Information

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BAC

Clone NameMSMg01-112C15
Chromosome7 (Build37)
Map Location 102,976,705 - 102,976,924
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040132, LOC666823
Downstream geneFrda-ps, EG666836, Odz4, LOC670727, LOC666858
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112C15.T7 (MSMg01no112_c15.b1)MSMg01-112C15.TJ (MSMg01no112_c15.g1)
ACCAG324650AG324651
length754743
length of high quality
(start - end)
222 (45 - 266)374 (75 - 448)
definitionCHROMAT_FILE: MSMg01no112_c15.b1 PHD_FILE: MSMg01no112_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:14 2005CHROMAT_FILE: MSMg01no112_c15.g1 PHD_FILE: MSMg01no112_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGTGCTTCTACAGGAGATGGTGGCTTGAGGCAGTTACATCACCAG
GGGCTCCTGGGCCACCTTGCCCCCTCACATATTCTGGTCAGCAGCAAAGA
CAAGAGACCTAGTCCAAACAAGGTATGCAGTAGGAACCAGTGTCTGAAAG
TAGACCTCTGTGGTCCTCATCCATGTGGTGACATACATATGCCCATGCTC
TCCCATGGGTAACAATGAAGGCTTTAAGTATTCACATCTATATCACCTAG
CAGAAAAGATGAAGGCATCTATTTGATATGCCCCATGGCTTCAGAGTCTA
AAAGCTTCTGATTTATGATAACACCCTCTCTTATAAAGATAACCCCCTTG
AAATCCAAATATCTTTCACAATTACACATTCAAAGCTGCCTCAGATGCAA
TGTTCAAATATCATGAGCAGCTATGGTAGGTGGTTTCCTTTGACAATAGT
AGAGACACCGTACCAAGAGCCCATGTTATATATATTTGTCACGATGCGTC
AGGATTGCTGGACGGGTCTTTATCACCTTTCGATTCCCATTTGCCTCTCT
CAATGACTCCCATCATCTTTATATGCTACCTCACTCTATACCTTAAGGAA
ACCCGGGCTATTAGGCTGCTCTTTGTTTTCTCCACCTGTCTTTTGGAGCA
ATTCCCCATCTCACCTCTTAATTTATTCCCCATTTCCATATCCCTTTCCT
CCTC
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGTAGA
GAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCATTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCACGA
AGCTGGAAAGAACCTAGACGCCCCTCACCAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACCCAGCTATTACAAAGAACGAAT
TTATGACATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGCAACACATTCACAAAGAAACTCACACAATATGTACTCACTGATAAG
TGGATATTAGCCCCCCAACCTATGATACCCAAGATACTAGATATTATTTG
CTTAACACATGACACTCACGAATAATGAAGACTGAAGTGTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_c15.b1 MSMg01no112_c15.b1 CHROMAT_FILE:
MSMg01no112_c15.b1 PHD_FILE: MSMg01no112_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:14 2005
         (222 letters)



>mm_chr7_102976502_102977124
          Length = 623

 Score =  364 bits (188), Expect = e-105
 Identities = 212/220 (96%), Gaps = 1/220 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctgtgcttctaca-ggagatggtggcttgaggcagttacatcaccaggggctc 62
           |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctgtgctcctacaaggagatggtggcttgaggcagttacatcaccaggggctc 263

                                                                       
Query: 63  ctgggccaccttgccccctcacatattctggtcagcagcaaagacaagagacctagtcca 122
            ||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttgggccaccttgcctgatcacatattctggtcagcagcaaagacaagagacctagtcca 323

                                                                       
Query: 123 aacaaggtatgcagtaggaaccagtgtctgaaagtagacctctgtggtcctcatccatgt 182
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aacaaggtaggcagtaggaaccagtgtctgaaagtagacctctgtggtcctcatccatgt 383

                                                   
Query: 183 ggtgacatacatatgcccatgctctcccatgggtaacaat 222
           |||| |||||||||||||||||||||||||||||||||||
Sbjct: 384 ggtggcatacatatgcccatgctctcccatgggtaacaat 423


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 623
Length adjustment: 9
Effective length of query: 213
Effective length of database: 614
Effective search space:   130782
Effective search space used:   130782
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)