BAC Information

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BAC

Clone NameMSMg01-112J11
Chromosome7 (Build37)
Map Location 73,881,206 - 74,054,113
singlet/doubletdoublet
Overlap geneLass3, Adamts17
Upstream geneLOC665241, Pcsk6, Snrpa1, H47, Chsy1, Lrrk1, Aldh1a3, Asb7, Lins2
Downstream geneLysmd4, Mef2a, EG665304, Lrrc28, Ttc23, Dmn, LOC665319, LOC100041771
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112J11.T7 (MSMg01no112_j11.b1)MSMg01-112J11.TJ (MSMg01no112_j11.g1)
ACCAG324962AG324963
length724724
length of high quality
(start - end)
394 (45 - 438)443 (78 - 520)
definitionCHROMAT_FILE: MSMg01no112_j11.b1 PHD_FILE: MSMg01no112_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:47 2005CHROMAT_FILE: MSMg01no112_j11.g1 PHD_FILE: MSMg01no112_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,881,206 - 73,881,595)(74,053,671 - 74,054,113)
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGA
ATTCTTTAAAATCTCCCATGCATCTGATGAGGACAAAAGTTTGAATTAGA
TCTGTCCCTGAGAGTCTGGAGATTATCAACGAGTGACAGATCTCACTAAT
GGCTATAGTCCTCAAGTTCTCTAGGCCTGTGGCGTAACCTCAGCTTTTGT
CAGTAAGAAGTAAAGAGACATGGGTACCATGTTCTTGGGCACAGGTCCTG
GATGACTCATACCATGACACTTGATCTAATTTGTCGGTTTTGTAGGGCTC
TCTTTTTTTCTTTCATTTTTATTCGATATTTTCTTTATTTGTATTTCAAA
TGTTATCCCCTTTCCTAGCTTCCCTTCCAAAAATCTTCTATCCCCCCCTT
CCCCCCTGCTCACCAACCCACCCACTCCTGCTCCCTGGCTCTGGCACTCC
CCTATACTGTTTCCTGGAGCCTTCACAGGATCAATGGTCTCTCTTTCAAT
TGACGACTGACTACGCCATCCTCTGCTACATACGTAGCTGGAGCTATGAG
CCCCACCATGTGTACTCTCTTGGTTATTGATCTATTCTCTGCTAGTTCAT
GGTACAGTGATACGCACGTAGATCACTGTAATACAATTGAAGACCTTCAC
CTGAACTTCCCTTTTCTATGCTCACCTGTACCTTTCTAAAAGGATCTTAT
TACCTTCCACTGTTTGAAATAAAT
CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTACATATGTCCTAAGTGAGCCTA
GAACCAAAGGATGTTCAGGAAGCCCCAAGGACAACCATTTGGGACTTTAT
CCACAAGTTCAAATAGTGACTATCATTAAGGCAAACCGAAATACTTCTCA
GAAACAGAACAGTCTACAAAACCAGTGCACTCTCTTGATGTCTACCGATT
GCTTCACATTGCAGGCAGTCCTGGCTTATAGGGAGACACTCAACTGAAAC
ACCCAAACTAAGGCTCTGCTGGGTCCCAGTAAAGAAGGAGGTCCAGGAGC
AACCTCACTTCTGAGACCTCACCCAGCTTTCCACATACGTGAGAGTCATA
TGTCAGACCTCCCATGAGCAGGGGAAGATGCGTATGACCCCATGGTTCAG
TGGTCCCTGAGATTTAAGCAGCCTGCATACTCCTATGGTTTGAAACCCTG
GGGCTCCTCCTCTTCTCTCACAAGGGTGTCATTGTCATATCCAGGAGGGT
GAGCAAGCTTGTTTTCCTGAAGCCCTCCCGACCCGTTAAGCTCCCAGCAT
GCTCTACAAGGCACCCACAATGACTTACGGTGCGTTGTCTCACAAGGACC
AGCTTGTTGCATTGAATGTTTAATCTAACCCCAAGGCTCCTGCCGCTGAA
AAATGTTGTATACCCTATAATACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_j11.b1 MSMg01no112_j11.b1 CHROMAT_FILE:
MSMg01no112_j11.b1 PHD_FILE: MSMg01no112_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:47 2005
         (394 letters)



>mm_chr7_73881002_73881795
          Length = 794

 Score =  700 bits (362), Expect = 0.0
 Identities = 383/390 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttaaaatctcccatgcatctgatgaggacaaaagtttgaattagatctgtccc 64
           ||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttaaaagcgccaatgcatctgatgaggacaaaagtttgaattagatctgtccc 264

                                                                       
Query: 65  tgagagtctggagattatcaacgagtgacagatctcactaatggctatagtcctcaagtt 124
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 265 tgagagtctggagattatcaacgagtgacagatctcactaatagctatagtcctcaagtt 324

                                                                       
Query: 125 ctctaggcctgtggcgtaacctcagcttttgtcagtaagaagtaaagagacatgggtacc 184
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctctaggcctgtggtgtaacctcagcttttgtcagtaagaagtaaagagacatgggtacc 384

                                                                       
Query: 185 atgttcttgggcacaggtcctggatgactcataccatgacacttgatctaatttgtcggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgttcttgggcacaggtcctggatgactcataccatgacacttgatctaatttgtcggt 444

                                                                       
Query: 245 tttgtagggctctctttttttctttcatttttattcgatattttctttatttgtatttca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttgtagggctctctttttttctttcatttttattcgatattttctttatttgtatttca 504

                                                                       
Query: 305 aatgttatcccctttcctagcttcccttccaaaaatcttctatcccccccttcccccctg 364
           |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 505 aatgttatcccctttcctagtttcccttccaaaaatcttctatccccccctttccccctg 564

                                         
Query: 365 ctcaccaacccacccactcctgctccctgg 394
           ||||||||||||||||||||||||||||||
Sbjct: 565 ctcaccaacccacccactcctgctccctgg 594


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no112_j11.g1 MSMg01no112_j11.g1 CHROMAT_FILE:
MSMg01no112_j11.g1 PHD_FILE: MSMg01no112_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:47 2005
         (443 letters)



>mm_chr7_74053471_74054313
          Length = 843

 Score =  741 bits (383), Expect = 0.0
 Identities = 428/443 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacatatgtcctaagtgagcctagaaccaaaggatgttcaggaagccccaaggacaacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tacatatgtcctaagtgagcctagaaccaaaggatgttcaggaagccccaaggacaacca 584

                                                                       
Query: 61  tttgggactttatccacaagttcaaatagtgactatcattaaggcaaaccgaaatacttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tttgggactttatccacaagttcaaatagtgactatcattaaggcaaaccgaaatacttc 524

                                                                       
Query: 121 tcagaaacagaacagtctacaaaaccagtgcactctcttgatgtctaccgattgcttcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 523 tcagaaacagaacagtctacaaaaccagtgcactctcttgatgtctaccaattgcttcac 464

                                                                       
Query: 181 attgcaggcagtcctggcttatagggagacactcaactgaaacacccaaactaaggctct 240
           |||||||| |||||||||||| ||||||||||||||||||||||||||||| |||| |||
Sbjct: 463 attgcaggtagtcctggcttaaagggagacactcaactgaaacacccaaaccaaggttct 404

                                                                       
Query: 241 gctgggtcccagtaaagaaggaggtccaggagcaacctcacttctgagacctcacccagc 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 403 gctgggtcccagtaaagaaggaggtccaggagcagcctcacttctgagacctcacccagc 344

                                                                       
Query: 301 tttccacatacgtgagagtcatatgtcagacctcccatgagcaggggaagatgcgtatga 360
           |||||||||  |||||||||||||||||||| | ||| ||||||||||||||| ||||||
Sbjct: 343 tttccacatgtgtgagagtcatatgtcagactttccaggagcaggggaagatgtgtatga 284

                                                                       
Query: 361 ccccatggttcagtggtccctgagatttaagcagcctgcatactcctatggtttgaaacc 420
           |||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 283 ccccatggctcagtggtccctgagatttaagcagcttgcatactcccatggtttgaaacc 224

                                  
Query: 421 ctggggctcctcctcttctctca 443
           |||||||||||||||||||||||
Sbjct: 223 ctggggctcctcctcttctctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)