BAC Information

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BAC

Clone NameMSMg01-115C01
Chromosome7 (Build37)
Map Location 111,366,587 - 111,366,818
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66, Olfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1
Downstream geneTrim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115C01.T7 (MSMg01no115_c01.b1)MSMg01-115C01.TJ (MSMg01no115_c01.g1)
ACCAG326837AG326838
length734758
length of high quality
(start - end)		475 (46 - 520)232 (82 - 313)
definitionCHROMAT_FILE: MSMg01no115_c01.b1 PHD_FILE: MSMg01no115_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:59 2005CHROMAT_FILE: MSMg01no115_c01.g1 PHD_FILE: MSMg01no115_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACATGTGCTACTGGTAAGAAGTATTTTGCAGACTTTAAAAAAAAG
GAAAAAGGGAAATAATTAAGTAGATATTTCTTTAAGAGCCATAAACAGGT
CTGTGTTCGATGAGGGCAAACTTTTGAACTAGAACTTCAGCTCTCAGGAG
TTTATTAGACAACTATAGTTTGGTATCATCTCCTACAGAGATTCAATGTA
AATGATGATGTCTTCTGGTGATACATCAACCTCTGGACATGGACCCAGCC
TGCCATGTATCTATGGATACACAATTAGAATGTTCTGAAGATGGGCTAGA
GAGATGGCTCAGAGGTTAAGAGCATTGATAGCTCTTCTGAAGGTCCTGAG
TTCAAATCCCAGCAAACACATGGTGGCTCACAGCCATCCATGAGACCAGA
TGTCCTCTTCTGGTGTCTCTGAAGACAGCTACAGTGTACTTACATATAAT
AATAAATCTTCAGGCTGGTGCAAGCCGAGGTCCTGAGTTCAGTTCCCAGC
AACCACATATGGCTCACTACCATCTGCACAGCTACAGCGTACTCCTATAC
CTTAAATAAATAAGTAAATCTTTAGAATCGCTTGAAGTTTGTAAGTACTT
CAGTGTTCCCTTTAACAGTACACACGGACGACTGGAATTATTCAGAGTAG
GTTAGTATGGCCCCCACATAAAGAGAAGGTATGT

NTTTTGTCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATTACAGATGGTTGTGA
GCCACCATGTGATTGCTGGGAATTGAACTGAACTACTCAGGAAAAGCAGT
CGGTGCTCTTAACCGCTGAGCCACCTCTCTAACCCCTAGACTGTAAGTTA
TTAAAGGCAGGGCTACTGTGAAAAGAAAAGAATGCCAAACTTCCTGGTTT
GGGAGACTGACAACCCAACTGATCTCAGAAGATGGGGGGAGGGGGAAAGA
CTTTGGGGAGGAGCTGGGGGTGGACCACCTACCTCTTATTGTATTATTTG
CCTTCCCCACTCCCTTCCAATGCTTAGTGAATCTGTATTTCCCCTTGCTA
TTATTTCTTCTTTTTCCATTCTTTCGTCCTCCCTTCTCGGTTCTTCTATT
GTGCAATGATTATTTACCGACTGCGCTTTCTGCTTCACGCCATCTCTCTT
ATACCACTTTCGATGCTCCTTTCCCCGCCCTCTTTCCCCTATATCCTTCC
TCTTGTCTCCCTCCTTCATTTATTCACCCCTTTCTTTTACCCTCCCGCCG
CATTCGCCGTCCCTGTTTCTTTTATCTTTTACCCCTTTCGTTTTCTGTCT
CCCCTATTTCCCTCCTTCCCATGTCTTTTTGTCATGCCCTACTGCTCTTT
CTTTGCCTTTGCCGTCCCGTTATTCCTTTAATTTTTTTACCACCCCCTTT
ATCCATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_c01.g1 MSMg01no115_c01.g1 CHROMAT_FILE:
MSMg01no115_c01.g1 PHD_FILE: MSMg01no115_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:59 2005
         (232 letters)



>mm_chr7_111366282_111366913
          Length = 632

 Score =  441 bits (228), Expect = e-128
 Identities = 231/232 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctattacagatggttgtgagccaccatgtgattgctgggaattgaactgaactactcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ctattacagatggttgtgagccaccatgtgattgctgggaattgaactgaactactcagg 478

                                                                       
Query: 61  aaaagcagtcggtgctcttaaccgctgagccacctctctaacccctagactgtaagttat 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 477 aaaagcagtcggtgctcttaaccactgagccacctctctaacccctagactgtaagttat 418

                                                                       
Query: 121 taaaggcagggctactgtgaaaagaaaagaatgccaaacttcctggtttgggagactgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 taaaggcagggctactgtgaaaagaaaagaatgccaaacttcctggtttgggagactgac 358

                                                               
Query: 181 aacccaactgatctcagaagatggggggagggggaaagactttggggaggag 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aacccaactgatctcagaagatggggggagggggaaagactttggggaggag 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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