BAC Information

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BAC

Clone NameMSMg01-115H01
Chromosome7 (Build37)
Map Location 98,262,612 - 98,262,728
singlet/doubletsinglet
Overlap geneDlg2
Upstream geneEG384719, 2310010J17Rik, Picalm, Ccdc83, Sytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik, LOC666689, LOC621816, LOC100039943
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115H01.T7 (MSMg01no115_h01.b1)MSMg01-115H01.TJ (MSMg01no115_h01.g1)
ACCAG327070AG327071
length738785
length of high quality
(start - end)
401 (46 - 446)118 (86 - 203)
definitionCHROMAT_FILE: MSMg01no115_h01.b1 PHD_FILE: MSMg01no115_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:23 2005CHROMAT_FILE: MSMg01no115_h01.g1 PHD_FILE: MSMg01no115_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGCAGGCAGCTTACTGGTATTATTCTGTTAAATAGGCATAGTGC
TAAATTAACTCCTAACCAATTATTGTTATACTCATAGATTAATGCATCCA
TCTCTCAACCACTATCAGAGAAGTTTCTTTTTTTATAGTAGATGACAATT
AACACAGAAATCCACCACTAATCAAGTTGTAGAGAATAAGTTTCTTTGGA
ATACTCAACTCTAAATGAGATATCTTTATTGTACCTCTTCCTTCCTGGGC
TCATGTATCATCATGGAAGAGAGATCAGAAAAACTGTAAGTGCCAAAGAT
AGTAGATGACTTCTAAGACACAGTATTTTAACAATACAACATTTGTTCAT
ATGAATTTGATAGCGCGTGTGACAACATGCACAAGACTTTAGTAACACCA
AGCCAGACAAAATTTAAGCATGTAAATGGGAAGTAGACATAAAGTCTACC
CCTAGCTAAGAAATCAGTGACAATTTATAACTGGTAGGAGAGTTGGCTTT
CTTTAAGGTTGTTATCATTGCGAAGATATGTTCTAGTAGGTGGCCACATA
TCCACCACTCGCCTAGCGCCCACAACATGCCATCAGCGGGCTACCCCCGG
CCAAAGGCGAGATATTTGTGCGGGTAGACCCCCCTTCCACTCATAGGCCA
TCCAATAACAGCTTTTTCTCCCCCTCTTCCCCCCCCCG
NNNNNNGGCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATGGCAAATGGTA
TTTTCAGTAGAAGAGTTTGGATAGAAACATTGTGTGAGAAGACCAGGATT
GTTCACTCTTAGTAAGGTAGTAGTGAAAGGGGGAGGTTAGGATAGTAGCT
GACGCAGACACATAGTTTACGGATGCCCCCCGCCCCACTTCCTCCTCTCC
CCCCCCCCTCGGCCTTTTCCTCTTCCCCTTCGCCTTCTTGCGTCCTGTTT
TTCTTTCCTCCTCCTTTCCCCTTCTCCTCTCCCCCCTCCTTTCTCTCTCT
CCCCTCCCTTTTATTATCCCCTCTCCTCTCACTTCCTCCCCTCTCCCCCC
CCCTCCTTCCCGCGCTTTCCCCCCTTCCCTCCCCCTTCCTCCCCCCCCCC
CCCGTTCCTTTCCTCCTTTTTCCCCCTTCCTTTTTTCCTCTCCCCCCCCT
CTCCTCCCCCCCCTCCCTCCCTCCCCCTCCTTTCTCCCTCCTTCCCCCCC
CCTCCTTTCCCCGCTCCCCTCCCTCCTCTCTCCCCTCCCTTTTCCTTTCC
TCCCCTTTCTTTTCCCCCCCCCCTCCCCCTCGTTCCCCTCTCTTCCTTAT
CCTCCCTCCCCCCCTCCTTTTCCTTCTCCCCCTCTTTCCCCCCCCTCCCC
TCCATCTTCCCCCCCCCCCCCCCCCCTCCCTCCCCCTTCCCCCCCTTCCT
CCCTTCATTCTTTTATCCCCCCTCTTCTCTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_h01.g1 MSMg01no115_h01.g1 CHROMAT_FILE:
MSMg01no115_h01.g1 PHD_FILE: MSMg01no115_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:23 2005
         (118 letters)



>mm_chr7_98262412_98262929
          Length = 518

 Score =  219 bits (113), Expect = 6e-62
 Identities = 116/117 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatggcaaatggtattttcagtagaagagtttggatagaaacattgtgtgagaagacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatggcaaatggtattttcagtagaagagtttggatagaaacattgtgtgagaagacca 260

                                                                    
Query: 61  ggattgttcactcttagtaaggtagtagtgaaagggggaggttaggatagtagctga 117
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 ggattgttcactcttagtaaggtagcagtgaaagggggaggttaggatagtagctga 317


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 118
Length of database: 518
Length adjustment: 8
Effective length of query: 110
Effective length of database: 510
Effective search space:    56100
Effective search space used:    56100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)