Query= MSMg01no116_j04.b1 MSMg01no116_j04.b1 CHROMAT_FILE:
MSMg01no116_j04.b1 PHD_FILE: MSMg01no116_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:52 2005
(512 letters)
>mm_chr7_98748571_98749481
Length = 911
Score = 891 bits (461), Expect = 0.0
Identities = 496/509 (97%), Gaps = 4/509 (0%)
Strand = Plus / Minus
Query: 4 ggaattcacctggtctcttcatgtaagaactcagactctcatgcttgtgcatccttaccc 63
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ggaattcacctggcctcttcatgtaagaactcagactctcatgcttgtgcatccttaccc 543
Query: 64 acggagccatttctacagccctgctcttagacgttttagcacttgacacactctcattac 123
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 542 acgaagccatttctacagccctgctcttagacg-tttagcacttgacacactctcattac 484
Query: 124 actaatgcctactctcagaaaggcagcatccctcaggatgcactcgaagtgtcttaattt 183
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 483 actaatgcctactctcagaaaggcagcatccctcgggatgcattcgaagtgtcttaattt 424
Query: 184 ttataacctctgaaagcccacacatttcttcttttgatacatgctagagtactatgttgc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ttataacctctgaaagcccacacatttcttcttttgatacatgctagagtactatgttgc 364
Query: 244 tctcgttactaaacagtgcttggatggtaatgtcttctttggaaaattagtaagctgcaa 303
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tcttgttactaaacagtgcttggatggtaatgtcttctttggaaaattagtaagctgcaa 304
Query: 304 atctaagagaatcgggcctctgctgttattcctgggcatacaagagtgcttggtgcatag 363
||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 303 atctacgagaatcaggcctctgctgttattcctgggcatgcaagagtgcttggtgcatag 244
Query: 364 taaacatccaaaagatattgaccaaataatgcaagtaggatatggcttgtgtgtttgaag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 taaacatccaaaagatattgaccaaataatgcaagtaggatatggcttgtgtgtttgaag 184
Query: 424 tcaagattatcacacagtttttcaggacattctagtgactctacaagaaaaagacttaaa 483
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 183 tcaagattatcacacagtttttcaggacattctagtgactctataagaaaaagacttaaa 124
Query: 484 cactccaatatcatctcctatttaaaatg 512
|||||||||||||| ||||||||||||
Sbjct: 123 cactccaatatcat---ctatttaaaatg 98
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 911
Length adjustment: 10
Effective length of query: 502
Effective length of database: 901
Effective search space: 452302
Effective search space used: 452302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_j04.g1 MSMg01no116_j04.g1 CHROMAT_FILE:
MSMg01no116_j04.g1 PHD_FILE: MSMg01no116_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:52 2005
(488 letters)
>mm_chr7_98606188_98607075
Length = 888
Score = 903 bits (467), Expect = 0.0
Identities = 482/487 (98%)
Strand = Plus / Plus
Query: 1 tctctagggtttagagagatggctcatgcttacagcacttgcctgtaaacaggagagcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctagggtttagagagatggctcatgcttacagcacttgcctgtaaacaggagagcat 260
Query: 61 gaattccatcagccatcagcgtgaacgttcctaattgacagggtctaaaacagtgtgaga 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 gaattccatcagccatcagcgtgaaccttcctaattgacagggtctaaaacagtgtgaga 320
Query: 121 ccctgtctaagtagagcttcatggcagtcctgaagttgcctggcttccacatacatgtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctgtctaagtagagcttcatggcagtcctgaagttgcctggcttccacatacatgtca 380
Query: 181 atagaattaagcccacaatgggttttttatggcttttgaagaatgggttagaagatagta 240
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 atagaatgaagcccacaatgggttttttatggcttttgaaaaatgggttagaagatagta 440
Query: 241 ctcaaacttcctatttctttcatctacataaaagtaataacaatggttttaaagatacac 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 ctcaaacttcctatttctttcatctacataaaagtaataacaatggttttatagatacac 500
Query: 301 taaattgctttacttatatgtatgtatatatcaaaggcacaccaatttttaaaacaaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaattgctttacttatatgtatgtatatatcaaaggcacaccaatttttaaaacaaaaa 560
Query: 361 tttcttataataatctctaatgagtattaatagtgatcatttatgcaaatattcctaaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttcttataataatctctaatgagtattaatagtgatcatttatgcaaatattcctaaag 620
Query: 421 agttaactccattattattataacttctctaaaaactaaactctcactactgccaaggct 480
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agttaactccgttattattataacttctctaaaaactaaactctcactactgccaaggct 680
Query: 481 tctgtta 487
|||||||
Sbjct: 681 tctgtta 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
