BAC Information

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BAC

Clone NameMSMg01-117N18
Chromosome7 (Build37)
Map Location 111,057,039 - 111,057,582
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66, Olfr64, Olfr65
Downstream geneOlfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117N18.T7 (MSMg01no117_n18.b1)MSMg01-117N18.TJ (MSMg01no117_n18.g1)
ACCAG328881AG328882
length712710
length of high quality
(start - end)		605 (38 - 642)543 (71 - 613)
definitionCHROMAT_FILE: MSMg01no117_n18.b1 PHD_FILE: MSMg01no117_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:32 2005CHROMAT_FILE: MSMg01no117_n18.g1 PHD_FILE: MSMg01no117_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAC
CAGACCTTCAAAGAAGACCTGATACAAATTTTCCTCAAACTATTCCATAA
AATAGAAACAAAAGTAGCACAACCTAACTTGTTCTATGAAGCCACAATTA
CTCTGATACCTAAATCACACAGGGCCCAACCAAAAAAGAGAACTTCAGAC
CAATCTCACTTATGAATATCAATGCAAAAATACTCAATAAAATTCTAGCA
AACCGAATTCAAGAACACATCAAAACCATAATTCACCATGATCAAGTTGG
CTTCATCCCAGTGATGCAAGGTTGGTTTAATATATGAAAATTCATTATTG
CAATCCACTCTATAAACAAACTTAAAGAAAAAAATCACATGATCATCTCT
TTAGATGCAGAAAAAACATTTGACAAAATACAATACCTCTTCATGTTAAA
AAGTATTGGAGAGATCAGGAATTCAGGGCCCATACCTAAACATAATAAAA
GCAATTTACTGTAAACCAACAACCAATATCAAATTAAACTGACACATACT
TGAAACAATCCCACTGGAATCAGGGACAAGACAAGGATCCCCACTCTCCC
CATATCTATTCAATATAGTACTTGAAGTGTTAGTTAGAACAATAAGACAG
AAAAAAGTGATCATAGGAATACAAATTGGTAAAGAAGAAGTGAAGGTATC
ACTATTTGCAGA

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTCTGAGAAAGNAAAAAAAATCAAACTTT
TTTTCAAATTATTTTTGAGAGAGGACCCACGCATTACACTCTGGTCTAAA
ACTTTCTACGTAGGTAGAATAATATTGAACTACTGCTCATCTTGCCTCTG
CCTCCTAAGTGCATGGATTGTAGGTGTGCATTTCCACTCTGTGTAGTTTT
ATGTGCTGTTCAGGGATGAATCAAAGGACTCCATAATCTGAGGCACAGCC
AAGCCCTCATATTTTTGAAGTTTCTAGATGATGTTGCGTTGTCCACACTT
TGGAACACATCATTAGACAAAATAGAAGAAACATAGGCAGGAGGTAACAG
ACAGTCACACAGACAGAGAAAGCCAGGCACTTAAGCTTACTTTCATTGGT
TTAATAAAAATTATGTGTTATTAAAAATAATCTATTTGGTAAGTTCTGTA
GCACAGCAATTACTAAATTATTTTATTCTGTACTGTCTAAGGAACAAATT
CTTGGAGCTATGAAAGGAGAAACATAGATTTTACACAAAATCAGAACATG
AAGCCAAGTTGCAGAAGAACAATATTAAACAAGAAATAGTTCACTGCGCA
GATAAGATAAAAATTTCCTAGTAGCTTGGAAACTGCTGTAAAGATTTTTT
TTTCTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_n18.g1 MSMg01no117_n18.g1 CHROMAT_FILE:
MSMg01no117_n18.g1 PHD_FILE: MSMg01no117_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:32 2005
         (543 letters)



>mm_chr7_111056672_111057614
          Length = 943

 Score =  930 bits (481), Expect = 0.0
 Identities = 528/544 (97%), Gaps = 1/544 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctgagaaag-naaaaaaaatcaaactttttttcaaattatttttgagagaggaccca 59
           ||||||||||||  ||||||||||||||| ||||||||||||||||||||| ||| ||||
Sbjct: 911 attctgagaaagagaaaaaaaatcaaactctttttcaaattatttttgagacagggccca 852

                                                                       
Query: 60  cgcattacactctggtctaaaactttctacgtaggtagaataatattgaactactgctca 119
           || ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 851 cgtattacactctggtataaaactttctacataggtagaataatattgaactactgctca 792

                                                                       
Query: 120 tcttgcctctgcctcctaagtgcatggattgtaggtgtgcatttccactctgtgtagttt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tcttgcctctgcctcctaagtgcatggattgtaggtgtgcatttccactctgtgtagttt 732

                                                                       
Query: 180 tatgtgctgttcagggatgaatcaaaggactccataatctgaggcacagccaagccctca 239
           ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tatgtactgttcagggattaatcaaaggactccataatctgaggcacagccaagccctca 672

                                                                       
Query: 240 tatttttgaagtttctagatgatgttgcgttgtccacactttggaacacatcattagaca 299
           |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 671 tatttttgaagtttctagatgatgctgtgttgtccacactttggaacacatcattagaca 612

                                                                       
Query: 300 aaatagaagaaacataggcaggaggtaacagacagtcacacagacagagaaagccaggca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 611 aaatagaagaaacataggcaggaggtaacagacagtcacacagacagagaaagccagtca 552

                                                                       
Query: 360 cttaagcttactttcattggtttaataaaaattatgtgttattaaaaataatctatttgg 419
           ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 551 cttaagcttactttcattggtttaataaaaattatattttattaaaaataatctatttgg 492

                                                                       
Query: 420 taagttctgtagcacagcaattactaaattattttattctgtactgtctaaggaacaaat 479
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 491 taagttctgtagcacagcaattaataaattattttattctgtactgtctaaggaacaaat 432

                                                                       
Query: 480 tcttggagctatgaaaggagaaacatagattttacacaaaatcagaacatgaagccaagt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tcttggagctatgaaaggagaaacatagattttacacaaaatcagaacatgaagccaagt 372

               
Query: 540 tgca 543
           ||||
Sbjct: 371 tgca 368


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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