BAC Information

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BAC

Clone NameMSMg01-118A13
Chromosome7 (Build37)
Map Location 69,255,141 - 69,255,799
singlet/doubletsinglet
Overlap genenone
Upstream geneD0Kist2, LOC100041248, LOC100041259, EG664943, B230209E15Rik, EG620934, LOC100041293
Downstream geneNdn, Magel2, Mkrn3, Peg12, Atp5l-ps1, EG665038, LOC669222, LOC384631, LOC622243, EG622251, Chrna7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118A13.T7 (MSMg01no118_a13.b1)MSMg01-118A13.TJ (MSMg01no118_a13.g1)
ACCAG329013AG329014
length702709
length of high quality
(start - end)
662 (41 - 702)247 (72 - 318)
definitionCHROMAT_FILE: MSMg01no118_a13.b1 PHD_FILE: MSMg01no118_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:45 2005CHROMAT_FILE: MSMg01no118_a13.g1 PHD_FILE: MSMg01no118_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAGAACCGCGGAATTC
TAATGTATACCCTAGGACTGCCTGTGACTCAAAATTTTATTTCAAGTAGA
TCTCATTTAGTGGAATGGCCTTTCAGATGTACATAATTAATTTAATACCC
AAGGTGCTAATTAGATATGTTGAAAGTGATATCTAGGGTACCCTCCATGG
TTACCTGCCAAACCAAATCCAGCCCATTTTTCTCCATTTAAAGGAAAATA
GTGCATGCATTAGATCTCCTTTTTCTTCTTTTTTCTTCCATATCATCACA
CATTCATTTTACCATTGCTTACAATTCAGTTCATGAACATAAAGACAACA
GCAATGTGACACTTCTAAGCAATTAATGATTTAGAGTTTGTTGCACACAA
CAGAGAAAAAACCTTGTGCATGGGGAAATATGATCCATATCCATGTAATG
ATATAGTATTGACAATATGGAATAAATATTCTGCACTTGATCTGGAAAGC
CACAGAATTTTACAGTAGAAGGGACTGCCTCAACCTGTCACATGTCTCCC
TGTTCTCACTCCATACTCTGCAGAACATCCCTATTTACTCTCTCACTTGC
CATGTTGCCATATTCCAGAGTTACTTGGAAACTCACTCCATTTGCTGTAA
TGATATGATATTTCTCCTCAAAATAGTCCTAATCTGAGTGAGAAAACTAG
TT
ACGATGAAGTGGGAGGCCTGGCGGCCGCCTGTTTCAAAAACTGAGGTGAA
CTATAGAAGTTTCACAAAAATTCTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCACCATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGTTCA
AAAATTCAGGTGACAGCAGATGCTGGCGTAGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCATATTTTTGGATATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATCTACCCCGAAGATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAACAGCCTTATTTATAATAGCCAGAAG
ATGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGC
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGGAACTCACACAATCTGTACTCACTGATAAGCG
GATATTAGCCCAAAACCTAGGATATCCAAGATATAAGATACAATTTCCTA
AACACATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_a13.b1 MSMg01no118_a13.b1 CHROMAT_FILE:
MSMg01no118_a13.b1 PHD_FILE: MSMg01no118_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:45 2005
         (662 letters)



>mm_chr7_69254937_69255999
          Length = 1063

 Score = 1056 bits (546), Expect = 0.0
 Identities = 631/660 (95%), Gaps = 3/660 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaatgt--ataccctaggactgcctgtgactcaaaattttatttcaagtagatc 62
           ||||||||| ||  ||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 863 gaattctaaagtaaata-cctaggactgtctgtgactcaaaattttatttcaagtagatc 805

                                                                       
Query: 63  tcatttagtggaatggcctttcagatgtacataattaatttaatacccaaggtgctaatt 122
           ||||||||||||||||||||| | |||||||||||||||||||||||  |||||||||||
Sbjct: 804 tcatttagtggaatggccttttaaatgtacataattaatttaatacctgaggtgctaatt 745

                                                                       
Query: 123 agatatgttgaaagtgatatctagggtaccctccatggttacctgccaaaccaaatccag 182
           ||||||||||||||||| ||||||||||| ||||||||||||| | ||||||||||||||
Sbjct: 744 agatatgttgaaagtgacatctagggtactctccatggttaccggacaaaccaaatccag 685

                                                                       
Query: 183 cccatttttctccatttaaaggaaaatagtgcatgcattagatctcctttttcttctttt 242
           |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 684 cccatttttctccatttaaaggaaaatactgcatgcattagatatcctttttcttctttt 625

                                                                       
Query: 243 ttcttccatatcatcacacattcattttaccattgcttacaattcagttcatgaacataa 302
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttctttcatatcatcacacattcattttaccattgcttacaattcagttcatgaacataa 565

                                                                       
Query: 303 agacaacagcaatgtgacacttctaagcaattaatgatttagagtttgttgcacacaaca 362
           ||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agataagagaaatgtgacacttctaagcaattaatgatttagagtttgttgcacacaaca 505

                                                                       
Query: 363 gagaaaaaaccttgtgcatggggaaatatgatccatatccatgtaatgatatagtattga 422
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 504 gagaaaaaaccttgtgcatggggaaatatgatccatatccatgtaatgatctagtattga 445

                                                                       
Query: 423 caatatggaataaatattctgcacttgatctggaaagccacagaattttacagtagaagg 482
           |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 444 caatatagaataaatattctgcactcgatctggaaagccacagaattttacagtagaagg 385

                                                                       
Query: 483 gactgcctcaacctgtcacatgtctccctgttctcactccatactctgcagaacatccct 542
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gactgcctcaacctgttacatgtctccctgttctcactccatactctgcagaacatccct 325

                                                                       
Query: 543 atttactctctcacttgccatgttgccatattccagagttacttggaaactcactccatt 602
           |||||| ||||  ||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 324 atttacactcttgcttgccatgttgccatactccagagttacctgtaaactcactccatt 265

                                                                       
Query: 603 tgctgtaatgatatgatatttctcctcaaaatagtcctaatctgagtgagaaaactagtt 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgctgtaatgatatgatatttctcctcaaaatagtcctaatctgagtgagaaaactagtt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1063
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1053
Effective search space:   686556
Effective search space used:   686556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)