BAC Information

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BAC

Clone NameMSMg01-118P20
Chromosome7 (Build37)
Map Location 131,447,139 - 131,447,572
singlet/doubletsinglet
Overlap geneEG628779
Upstream geneArhgap17, Lcmt1, Aqp8, Zkscan2, LOC100043482
Downstream geneEG545999, LOC670828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118P20.T7 (MSMg01no118_p20.b1)MSMg01-118P20.TJ (MSMg01no118_p20.g1)
ACCAG329721AG329722
length1,247717
length of high quality
(start - end)
---508 (69 - 576)
definitionCHROMAT_FILE: MSMg01no118_p20.b1 PHD_FILE: MSMg01no118_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:00 2005CHROMAT_FILE: MSMg01no118_p20.g1 PHD_FILE: MSMg01no118_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCCCCCTTCCGCCGGTGCGTCTCGTGNCTGATTTTTTCTATNNTGTTC
CAGTAGAGAGAGAGGNGNGTANNTTNTTNTGTGTTTTTTGTTTTCCCCNA
TAAGAAGGAAGTGGTGCGTNGTGTTTNTTTTTTGGNTTGTGTTTTNTNNT
TGTTGTCTTTTTGTTGTGGGGGTGNTGGGTCGGCCTGTCGCGGCCGCTCT
TCNATATTGTATAGATANCTCTATAGCTTCTCCTTGTCAGCGCACTTTGA
TCTTGAATTTTCTATGTATAGTATAATGCTAGTCTAGTCTGTCCGTCTTT
GTTTTGAATATGTCGCACCCCCGCCTATATGCATTCCTCTTCTCATTGTG
TTATATCTGCCGCTCTTGTGTGCCCTACTCCTCTCTCTTCATGATTTTAT
ATAGCGCAGCACACATCATTAATCAACAGCAGCTCACCGTCTTCGACCGT
GTGCGTATGCGCATTTTTCACCGTTTTCGCGTTATATTCTATAATATATA
GCTATTACTTTATCACTTTCGATAAACGAACAATACAAACCACAGATATA
TATCACAAATAACAAATATAAACATGTCACACTTTATAGCACTTACCCTC
TTCGTCACCCACCTATTCACCACCGTTAATATGCCATATAATTACACTTC
CACCCACAAGTTATTGTTTGTTGTGTGTCGCCCCCCCCGCGGCGCGTCGG
TAAACAATATATACTCCTCCCGCCGCCGCGCCCATATATATTAGTATACG
CACATTAGTATAACGCACCCCATATAGCTGTTACATATTATACCTACGTT
ATATTACGCGCGTACCCAACACCGCCCCCTATTCCCATTNTTATATAATA
AATAATACTCGACCCCCAGACCACAGCACATCACTTACACACTAAACGCT
ATATATCATCACCCGCCACATTATACCATTATTTTAGATCTCCCACACCC
CCACACGTAATATATATATAACCGAATATTATTCACACCCACGATTACGC
TATTCGCTGTTCTATTTTCCCGCCCATATACCACGGCAGATACACACATA
TATATTATGTTTCCACCGCGCGCTGCGTGTATCAACATCTTGTATATGTT
TCACCCCACCCCTATACTAGTGCGCCTTTTACACCAATGATTCCGCTTAT
CCTTACCGCCGCGTTATCCATTTACCACCACCCTATAATGTCATATCCAT
ATATACTATTAGCCCCAATAATATATTCGCACCGTATCTCATCGCGA
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATCACTCTCTGGTTGTACTATGCTAGAAAGTG
GTATAGCCCTGTAGAATTCAGTTTTGCAGTGTCAGCAGAGGTTTTCTGGG
CTGAGAGTACTTAAGGGCAGCTGCAATGTCTCAGACTCCATACCTTATCC
CTAGAACTCAGCAACATGGAAGCAGTTGAGAAATTATCTGGGGAGTGGGT
TTAGGCCTGAGCGGATGTGTACTTTTGACATGAGCATGGGCGTGTGCAGC
TCTTGGAATGGGAATGGCCCCCATAGGCTCATATATTTGAATGTTTGGTT
CCCAGTTGGTGGACTGTGTGGGAAGGTGTGGCCTTGTTGCAGGAGATGTG
TTCTAGGGGCAGGCTTTGAGGCTACAAAAGTCAATGTCAGAGCCAGTCTC
TCTGTCTTTCTCTGTTTCTTTCTGTCTATCCCTGCCTTTCTCTGTCACTG
CCTCTTTGCCTGTCTGCCTGTCTGCCTGTCTGCTTGCCTCTGTATATCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCTTTCCCTTTC
TCTTTCCCAGTCTCTCTCTCTCTTCATCTGTCACTGTCCCTCTCCTTCCT
TCCTTCCCTCCCTCCTTCTTTCTTCGTGCACGACATGCTGTAATTCGTTC
CCCCACCCTCCGTTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_p20.g1 MSMg01no118_p20.g1 CHROMAT_FILE:
MSMg01no118_p20.g1 PHD_FILE: MSMg01no118_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:00 2005
         (508 letters)



>mm_chr7_131447139_131448046
          Length = 908

 Score =  808 bits (418), Expect = 0.0
 Identities = 430/434 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcactctctggttgtactatgctagaaagtggtatagccctgtagaattcagttttgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 atcactctctggttgtactatgctagaaagtggtatagccctgtagaattcagttttgca 375

                                                                       
Query: 61  gtgtcagcagaggttttctgggctgagagtacttaagggcagctgcaatgtctcagactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gtgtcagcagaggttttctgggctgagagtacttaagggcagctgcaatgtctcagactc 315

                                                                       
Query: 121 cataccttatccctagaactcagcaacatggaagcagttgagaaattatctggggagtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cataccttatccctagaactcagcaacatggaagcagttgagaaattatctggggagtgg 255

                                                                       
Query: 181 gtttaggcctgagcggatgtgtacttttgacatgagcatgggcgtgtgcagctcttggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gtttaggcctgagcggatgtgtacttttgacatgagcatgggcgtgtgcagctcttggaa 195

                                                                       
Query: 241 tgggaatggcccccataggctcatatatttgaatgtttggttcccagttggtggactgtg 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tgggaatggtccccataggctcatatatttgaatgtttggttcccagttggtggactgtg 135

                                                                       
Query: 301 tgggaaggtgtggccttgttgcaggagatgtgttctaggggcaggctttgaggctacaaa 360
           ||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||
Sbjct: 134 tgggaaggtgtggccttgttggaggagatgtgttctaggggtaggctttgaggttacaaa 75

                                                                       
Query: 361 agtcaatgtcagagccagtctctctgtctttctctgtttctttctgtctatccctgcctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  agtcaatgtcagagccagtctctctgtctttctctgtttctttctgtctatccctgcctt 15

                         
Query: 421 tctctgtcactgcc 434
           ||||||||||||||
Sbjct: 14  tctctgtcactgcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)