BAC Information

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BAC

Clone NameMSMg01-119G01
Chromosome7 (Build37)
Map Location 4,980,067 - 4,980,240
singlet/doubletsinglet
Overlap gene6430526N21Rik
Upstream geneLair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524
Downstream gene4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119G01.T7 (MSMg01no119_g01.b1)MSMg01-119G01.TJ (MSMg01no119_g01.g1)
ACCAG330013AG330014
length722713
length of high quality
(start - end)
109 (72 - 180)173 (72 - 244)
definitionCHROMAT_FILE: MSMg01no119_g01.b1 PHD_FILE: MSMg01no119_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:30 2005CHROMAT_FILE: MSMg01no119_g01.g1 PHD_FILE: MSMg01no119_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACAAATGCGCGGAAT
TCTTTGTTCAATTCTCGAGCCCCATTTTTAATGGGGTTATTTGATTTTCT
GAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTAT
CTGATTTAGGATCGCTAAAGATCCTTTCCTAATCTGCTGGTGGTCTTTTT
GTCTTATTGATTGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAC
GTCCCATTTGTCAATTCTCCATCTTATAGTACAATCCATTACTGTTCTGC
TCAGGAACTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCTCACTTTC
TCCTCTATAACATTCAGTGTCTCTGGATTTATGTGAAGATCCTTGATCTG
TTCATGGATTGCTACGATCAACATTGTCCCACTGGCTATCTTGCCACCAT
TATCCTACAGATTCTATGTAATCCCCATCACAATTTTTATTCATTTCTTT
CTCTTCCTCACATGTACCCCTCTGCCCATTCATCTGGTATCACTCCCCAT
TTTACCTATACGTCTATACTCCTTTCTAGGCCTTTCCACTCTTTGCTGGT
TTCCCCCTGTTCCGATCCTTTGCTCTCCTTTTCACCCCTTTGCTTACCCA
TTCTGTCCCCTTCTGCCTTTTTCGACCCACCAGTCCCACCACTGGCCCCA
GTTTCGTTTATCTTTTATCCCC
TGCAGTGAGTAGGCTGGCGGCGCCTGGACATCGGAAGTNGGTGAACTATA
GAAGGATTTTCTGAATCAAGGATAGCCAGGGCTACACAGAGAAACACTGT
CTAAAACAAAGAAGAAAAACAGGGGGGTTGGGGGTGGAGGCTTAGGTTTG
AAGCTGGCGTTTTGGTTCCTGAAGCTGCTGTCTAAACCACTCAGATGGGA
TCTATTCTTATCTTCATTTTGCAGTGGCAAAACCAGAGGACTGAGACCAG
ATTATGGTATGGGGAATGGAGTAGAGGGAATCAATTTAGAGGAGAGTTTG
AGTGCTACCCCACCTCTTTGGTCCTTGTCGAATTAGTCCTGCAAGAGAAA
GCAGGTGTATAATGCCACCCTGACTATCACTAGGGCGGTGTGCGAAGACT
CCAGAAACGATGGACGTATGGTTGGCCATCACCCTATTTTTGCCCCTGCA
CCTCCTTTTGCCCCCCGCCCCCTTCATGCCCCGTTTGCCCCGTTACCGCC
TTTCGTTTTACCACGCCGCCATTCGCCCCTATAGCCCCTAGTTTCTTTCG
TCTCGCTCCCTCCGCTTTTCCCTTTCTACCCCCTTTGCCCTTTTCCACAC
CCACCCCCCCTTTTTCATTTTCTTTATTACCATCCCTTCCCCCCCATCCT
CCGTTTTTCCCCCTTTTCCTTTTTTTCCTTTCGTTTTCCCCAACCTCCCC
TTTCCTGTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_g01.g1 MSMg01no119_g01.g1 CHROMAT_FILE:
MSMg01no119_g01.g1 PHD_FILE: MSMg01no119_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:30 2005
         (173 letters)



>mm_chr7_4979868_4980440
          Length = 573

 Score =  321 bits (166), Expect = 1e-92
 Identities = 172/174 (98%), Gaps = 1/174 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagccagggctacacagagaaacactgtct-aaaacaaagaagaaaaacaggggggttg 59
           ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 200 atagccagggctacacagagaaacactgtctaaaaacaaagaagaaaaaaaggggggttg 259

                                                                       
Query: 60  ggggtggaggcttaggtttgaagctggcgttttggttcctgaagctgctgtctaaaccac 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggggtggaggcttaggtttgaagctggcgttttggttcctgaagctgctgtctaaaccac 319

                                                                 
Query: 120 tcagatgggatctattcttatcttcattttgcagtggcaaaaccagaggactga 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcagatgggatctattcttatcttcattttgcagtggcaaaaccagaggactga 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 573
Length adjustment: 8
Effective length of query: 165
Effective length of database: 565
Effective search space:    93225
Effective search space used:    93225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)