Query= MSMg01no119_j18.b1 MSMg01no119_j18.b1 CHROMAT_FILE:
MSMg01no119_j18.b1 PHD_FILE: MSMg01no119_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:48 2005
(559 letters)
>mm_chr7_111067396_111068354
Length = 959
Score = 928 bits (480), Expect = 0.0
Identities = 525/540 (97%), Gaps = 2/540 (0%)
Strand = Plus / Minus
Query: 21 tgtactacaggaggtgtccaataagtgtcaatagtgctgataagaaaccaaggtaacatg 80
||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||
Sbjct: 950 tgtactacaggaggtgtccaacaagtgtcaatagtgctgataaggaaccaagataacatg 891
Query: 81 agctgagaaaggaccaaagtttaatcaacatggaaaccattgatgatcaagaaaggagaa 140
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 890 agctgagaaaggaccaaagtttaatcaacatggaaaccattggtgatcaagaaaggagaa 831
Query: 141 gttccagcagagtggttgaaataaaatcgtattctaaggcatcaaggagaaagagggaga 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 gttccagcagagtggttgaaataaaatcgtattctaaggcatcaaggagaaagagggaga 771
Query: 201 gtgagagacaggtgcatcagagcaatggggcaggattccatgacgcagatggtctttttt 260
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 770 gtgagagacaggtgcatcagagcaatggggtaggattccatgatgcagatggtctttttt 711
Query: 261 caggctcacatgtcatagtgtaatcagtaagtgttcatgtgtatttcccatcactacatt 320
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 caggctcacatgtcaaagtgtaatcagtaagtgttcatgtgtatttcccatcactacatt 651
Query: 321 tagctacttacatgaaataaattaaagaggattaaataatctagattgaattttggctaa 380
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tagctacttacgtgagataaattaaagaggattaaataatctagattgaattttggctaa 591
Query: 381 gtcagcataatctgaatacagagtatataag-ctaataaatgattaataataatgatgta 439
||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||
Sbjct: 590 gtcagcataatctgaattcagagtatat-agactaataaatgattaataataatgatgta 532
Query: 440 ctggtagagaatatctaaggttaaaaatccagtcaaaatatgagaggaggaggaataatg 499
||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||
Sbjct: 531 ctggtagagaatatctaaggttaaaaatccagttaaaatttgagaggaggagggataatg 472
Query: 500 actagaaaacagactttctagatcatgggttaggcttaatcattgattttaggtacatta 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 actagaaaacagactttctagatcatgggttaggcttaatcattgattttaggtacatta 412
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no119_j18.g1 MSMg01no119_j18.g1 CHROMAT_FILE:
MSMg01no119_j18.g1 PHD_FILE: MSMg01no119_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:48 2005
(516 letters)
>mm_chr7_110917043_110917958
Length = 916
Score = 930 bits (481), Expect = 0.0
Identities = 508/517 (98%), Gaps = 1/517 (0%)
Strand = Plus / Plus
Query: 1 acagaatgaagacagtataagatcttgaatttatctatatgtggatatgaataattcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 acagaatgaagacagtataagatcttgaatttatctatatgtggatatgaataattcacc 259
Query: 61 agagtgggaggatactcaattttctcagggcatgtttgttaggaaggtcttctatgtttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agagtgggaggatactcaattttctcagggcatgtttgttaggaaggtcttctatgtttc 319
Query: 121 tcattctgtaactgctattgtgggtctttttatagtcttgtccttctctaaaaggatcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcattctgtaactgctattgtgggtctttttatagtcttgtccttctctaaaaggatcta 379
Query: 181 ccagttcatatacaaattatccctctagatattcattttttctcaagctcaactgtttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccagttcatatacaaattatccctctagatattcattttttctcaagctcaactgtttat 439
Query: 241 attattcttttcctgcccattctctgagaacctatctatccattacttttttatttattt 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 attatacttttcctgcccattctctgagaacctatctatccattacttttttatttattt 499
Query: 301 aattaggtattttcttcatttacatttcaaatgctatcccaaa-gtctcctttactcata 359
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 500 aattaggtattttcttcatttacatttcaaatgctatcccaaaagtcccctttactcata 559
Query: 360 gatcttttctattttggccacaggcgattctcatcttgctttcttcatttgtccatcatt 419
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 560 gatcttttttattttggccacaggcgattctcatcttgttttcttcatttgtccatcatt 619
Query: 420 tatatttaacaaacccccacttgcagcctctgctatccattcatctttatcagtaactaa 479
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 620 tatatttaacaaccccccacttgcagtctctgctatccattcatctttatcagtaactaa 679
Query: 480 ttcacctacctaaggctgccatgcctttctgcctagg 516
|||||||||||||||| |||| |||||||||||||||
Sbjct: 680 ttcacctacctaaggccgccacgcctttctgcctagg 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
