BAC Information

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BAC

Clone NameMSMg01-119N22
Chromosome7 (Build37)
Map Location 111,739,699 - 111,740,126
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66, Olfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654
Downstream geneOlfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp, Smpd1, Apbb1, Hpxn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119N22.T7 (MSMg01no119_n22.b1)MSMg01-119N22.TJ (MSMg01no119_n22.g1)
ACCAG330381AG330382
length721718
length of high quality
(start - end)		681 (41 - 721)651 (68 - 718)
definitionCHROMAT_FILE: MSMg01no119_n22.b1 PHD_FILE: MSMg01no119_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:08 2005CHROMAT_FILE: MSMg01no119_n22.g1 PHD_FILE: MSMg01no119_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXCTATNATTCAGAAATCCGCGGAATTC
TTTGTTTATCTCTCTACCCCACTTTTTACTATTACTAATAAATTTAATTA
AAAGTAATATTAAAAGTTATTTGGTTCTTGGGAGTCTAACTTCTTGAGTA
CATTGTATATGTTGGATTTTAGCTCTGTATGAGATGTAGGATTGGTGTAG
TGGCTATTCCTGGTTGTCAACTTGACTATATTTGGAATGAACTACAATCC
AGAATTGGAAGGCTCACCAGTGACCCTTATCTGGAGGCTTGGAGATCCCT
ATCTGGATCTTGGTATGGAGATCTTGAGCCATAGTGGCTATGGATTCCAG
AAGATTAAATCTCCGAGTTTAAGGAACACACCTTTAATCTGGGCTACACC
TTCTGCTGGAGACAATATAAGGACATTGGAAGAAGGGAGTCATGCTCTTG
CTCCTTTGCCTGCTTGCCGTGTGAGACTGAGTAACTGCTAGATCCTTGGA
CTTCCATTCACAGCTGCGACTGAACAATTGTTGGGAATTGGGCTGCCGAC
TGTAAGCCATCAATAAATTCCTTTACTATCTAGAGACTATCCATAAGTTC
TGTGACTCTAGAGAACCCTGACTAATACAGAAGTTGGTACCAGGAGTGGT
TCTAGAGTAACAGAAGTACAAGGATGAATCTTTTAAAATACTGGAATTGA
CTTGTTGATCCACCAGCACTT

ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTACAGTATTTGTGTAAACATCAAATTGGGGTTA
CCTGGACACAAAATTGCTTTTTCTGACTGACCCATTCCACTATAACTAAA
ATCAACAGTCCACAATTAATATCAACGTCTTCTATACAATGCTGAAGATT
TAATATTGTAGTCCACAGAAATGTGTGGTGGTATGTTCCTTATTTTTTGT
GTATTACTTGCTTCATTTAATTTGAAAATATTCAATGTATGTTTTCTAAG
TGAGATGTCCCCAACAAATCCTTCCCCCCTGGAGCACAGGGAACCTCAAG
GGTGGGGAAGTAGAACGGGAGGAAGAGACAAAGGGGCAAGAGAACAAGGT
GCTCTGAGACAACTAAGCAAAGCTTGTATAAACTCACAGAGACCCAAGCA
GCAAGCACAGGGCTTACAAGTGTTTGTACCAGGTCCTCTGCATACATACT
CTAGCTTTGAATTTAGAACTTTTATGGGACTCCCAAATGTGTAAACAAAT
GGGTCTGTGATCCTTGTATCTTCTCACGGGGATTTTTTAAAATTTTTCTA
TAGACATTTGTTTCTAAGTATGATAGGTTTTGGTTTCTTATTATATTTTA
TTTTGCTAAAAATAAAGGAATGTGTGTCCCCTCCCTTTAAAAAATTATAT
ATTATATTAACATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_n22.g1 MSMg01no119_n22.g1 CHROMAT_FILE:
MSMg01no119_n22.g1 PHD_FILE: MSMg01no119_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:08 2005
         (651 letters)



>mm_chr7_111739699_111740749
          Length = 1051

 Score =  820 bits (424), Expect = 0.0
 Identities = 427/428 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacagtatttgtgtaaacatcaaattggggttacctggacacaaaattgctttttctgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tacagtatttgtgtaaacatcaaattggggttacctggacacaaaattgctttttctgac 369

                                                                       
Query: 61  tgacccattccactataactaaaatcaacagtccacaattaatatcaacgtcttctatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tgacccattccactataactaaaatcaacagtccacaattaatatcaacgtcttctatac 309

                                                                       
Query: 121 aatgctgaagatttaatattgtagtccacagaaatgtgtggtggtatgttccttattttt 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aatgctgaagatttcatattgtagtccacagaaatgtgtggtggtatgttccttattttt 249

                                                                       
Query: 181 tgtgtattacttgcttcatttaatttgaaaatattcaatgtatgttttctaagtgagatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tgtgtattacttgcttcatttaatttgaaaatattcaatgtatgttttctaagtgagatg 189

                                                                       
Query: 241 tccccaacaaatccttcccccctggagcacagggaacctcaagggtggggaagtagaacg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tccccaacaaatccttcccccctggagcacagggaacctcaagggtggggaagtagaacg 129

                                                                       
Query: 301 ggaggaagagacaaaggggcaagagaacaaggtgctctgagacaactaagcaaagcttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggaggaagagacaaaggggcaagagaacaaggtgctctgagacaactaagcaaagcttgt 69

                                                                       
Query: 361 ataaactcacagagacccaagcagcaagcacagggcttacaagtgtttgtaccaggtcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  ataaactcacagagacccaagcagcaagcacagggcttacaagtgtttgtaccaggtcct 9

                   
Query: 421 ctgcatac 428
           ||||||||
Sbjct: 8   ctgcatac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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