BAC Information

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BAC

Clone NameMSMg01-119O09
Chromosome7 (Build37)
Map Location 104,529,048 - 104,529,297
singlet/doubletsinglet
Overlap geneAlg8
Upstream geneOdz4, LOC666858, Nars2, Gab2, LOC100040457, Usp35, EG622320
Downstream geneNdufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119O09.T7 (MSMg01no119_o09.b1)MSMg01-119O09.TJ (MSMg01no119_o09.g1)
ACCAG330403AG330404
length738723
length of high quality
(start - end)
210 (74 - 283)251 (69 - 319)
definitionCHROMAT_FILE: MSMg01no119_o09.b1 PHD_FILE: MSMg01no119_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:10 2005CHROMAT_FILE: MSMg01no119_o09.g1 PHD_FILE: MSMg01no119_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGA
ATTCCAGGACAGTCTCGGCTACACAGAGAAACCCTATCTCACAAAAACAA
ACAAAAAAACAAAACAAAACATAAAACAAACAAACAAAAAAGAGTGTTTC
TTACAAGTGGCATGAAGGACTTGAGAACATGGGAAAGTATTCTCTCTCTC
TCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCCTCCCTCCCTCTCTCCC
TCCCTCTTTCTTTCCCTCCCTCTCTCTCTCTCTCCGTAATCTAATTCATT
ATGACATCTTCTCCATCAGGAGACGATTTCTTAGCTCTACCATGTACCTT
CATATTGTTTTCCGGTCTATCCTCTCTATGATAACGTCGACAAACACCTT
CTCGCTTTTGACACAAACCCATTCTGAACATTTACTCCCGATTCACTTCT
TTCAGACTCATTCTGTTCTTGACCACTCCATTTGTATCACAGTTACCTAT
TTTTTATTTTGCCTCACCCCCCGTCCTACCCCTTCCCCTTTTCTTTCGCT
TCTCTTCCACGTTTTCCGATTCCTCATTATCCCCTTTGTCTCACTTTCCC
GCTCCTTCCCTCATTTCCCCATTTTCCCTTCCTATTTTCCCCTTTTGCCC
CCCTCTCTTCCCCCTTCCTTGCCCTTTTTCCCTTTTTGTTCCCTAACCCC
CCGCACAATCCCCCCATTCCCTATTTTATTATTTCCCC
ACAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTCTGAAAATCCACCTACCTCATAGAGACTGGAAAAGAACCAA
ATGTGGCCATGGTAAGCCTTAGATAGAAACACGGATCTTTCCATTTCAAG
TTCTGTACTTCCATCACACTATGCTAACTAACCCACGAGCTCCTCAGAGA
AAAGCCACCACCACTTTCACAGCAACCGCTACTGGAGACTCCACCTGGCA
CAGGCAGTGCAGCCAGACAGAACTGCCTACTACTAATCCACACCTGCCAC
ACTGTAAGAAGATTTTAGTATATAATTTATATCCTGTTATATATTTAATA
TAATAAAATCATTTCTATATTCAGGATATCATTTTCCAATCTCAAAGAGA
ACATACCCTCCACACAGCATGTAGAGTTTGTGGAAGTACCATTAATACCG
TCTGTGGTGAAATTCCGAACAGTGCCTTAAATAACTTATCTACTATCACT
ACCATACTCTGTTTATCGAGGCAACCTAATTACGTTTCTCGGTGCTTACC
TGTCATAGACCTGCAACCGCATATAGCTTTATTCCCCACTGATCGTTTTT
GTACTGAAAACGACTATTTGTGTAATGTCTTGGAACCAGACCCTCCACTC
CTACCATCGTGTGTTCCCGCTTGACCATACCAATTCATGCATGCTTTCCT
TAATGCCCCTTTTACCATTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_o09.g1 MSMg01no119_o09.g1 CHROMAT_FILE:
MSMg01no119_o09.g1 PHD_FILE: MSMg01no119_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:10 2005
         (251 letters)



>mm_chr7_104528848_104529498
          Length = 651

 Score =  445 bits (230), Expect = e-129
 Identities = 245/250 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacctacctcatagagactggaaaagaaccaaatgtggccatggtaagccttagatagaa 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 cacctacctcacagagactggaaaagaaccaaatgtggccatggtaagccttagatagaa 391

                                                                       
Query: 61  acacggatctttccatttcaagttctgtacttccatcacactatgctaactaacccacga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 acacggatctttccatttcaagttctgtacttccatcacactatgctaactaacccacga 331

                                                                       
Query: 121 gctcctcagagaaaagccaccaccactttcacagcaaccgctactggagactccacctgg 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 330 gctcctcagagaaaagccaccaccactttcacagcaaacgctactggagactccacctgg 271

                                                                       
Query: 181 cacaggcagtgcagccagacagaactgcctactactaatccacacctgccacactgtaag 240
           |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| 
Sbjct: 270 cacaggcagtgcagccagacagaactgcctacgactaatccacacctaccacactgtaaa 211

                     
Query: 241 aagattttag 250
           ||||||||||
Sbjct: 210 aagattttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)