BAC Information

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BAC

Clone NameMSMg01-121A10
Chromosome7 (Build37)
Map Location 120,458,205 - 120,458,522
singlet/doubletsinglet
Overlap genenone
Upstream geneMical2, Micalcl, Parva, LOC627808, Tead1, 4632411J06Rik, LOC434227, Arntl, A630005I04Rik
Downstream geneBtbd10, Pth, LOC100042736, Mlstd2, EG434228, Spon1, Rras2, LOC668451, Copb1, Psma1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121A10.T7 (MSMg01no121_a10.b1)MSMg01-121A10.TJ (MSMg01no121_a10.g1)
ACCAG331247AG331248
length702696
length of high quality
(start - end)
305 (54 - 358)292 (66 - 357)
definitionCHROMAT_FILE: MSMg01no121_a10.b1 PHD_FILE: MSMg01no121_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:40 2005CHROMAT_FILE: MSMg01no121_a10.g1 PHD_FILE: MSMg01no121_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTATACGACTCCTATATCGAGAGGACCGCGGAATTCAATCCCTT
CCCCACATGGAGGCTCACATCCGTAATGAGATCTGGTGCCCTCTTCTGGT
GTGTCTGACCACAGCTACAGTGTACTTACATTTAATAATAAATTAAAAAA
AAAGAAAGCCTTTACCCAGCTGAGAAAACAGGTTTCCCATGAGCATCCAG
ATGGAGCCTTAACCTTCTCCTCATCTTCCCCAGCCTTATATATTCTTATT
CCCTCCAAGGCCATGCCCAGTTAAAGGCAGAGTTGTATAGAACTGGAGGC
GGAACAGCTGGACACGCAGGTGAGGAAGGTCTTGTGATTGTCTCCACATC
TCCTTGGGCGGATATAAACAGTCAAAAAGCCTATCGAGTGTTCTTTTGCA
AACAGGCACAGCTGAGCACTCCAAGATGGCAATTCTGTGGCTCAGAGGGC
AGTCCTGGACTATTTGTATGGCTACAAAGAGTTAAGTGATCTAAGACCCA
AAGCACTTAAACTATGAATCTTTGTTGTAAACCATGAAATATTTAGAGAA
TTTGATGGAAAGAATATTGAATTAATTAGAAACTAGTCCTGAAAGCTAGG
GTTCCTAATACAAGCGTCATTCCATTTTCATATCCTGAAAATCTTGAACA
ACTGCTTTGGATTTATAGTATTTTTCCTGAACTTATAGGAAATCTAAGGG
CT
TATGATGTGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTCTGCGAAATTCTCCCAACAAGGTCAGGGTGGTTTGTGGTCTT
TGTCAGAATTCTGTGCCCGGCGGAGGGCAGGAGAATTGCTAATCTTGTTA
TGATTATCTCTCTGAGAACAGCTAATATTATTTTGGTAGTTGCAAGCTTA
ATCATTTTGACCGCTAAAAGTATGTTTTTACATTTGTTTAGTCAGCTAGC
TTCCTTATCTGGCTCTGCACTTTGCCTGCTAGTACAGTTTGGAAAGTCCT
TTTTGAAGGGGGAAGGTACTGGGTGGTCTTGAATTCATTTTGGATATTAC
ACCTTCCCTCCTTCAGTCCTCTTCCCCTCCCCTATCTCATGGTCTCTGTC
TAGCTTCCTGATCTCTACAAACATAATAACTAAAAGCTACACTCCACATA
TAAGAGGAGAGCATGTACATTTGCTTATGAATCTGGGTTGCCTCATTTAA
TACAACATTTTCCAGTTCCAACTATTTTGTTATTTCCCTCCATTTTAATT
ATTTACTTGGTATGAAGGAGTCAGAGGCCAACTTCCAGGTGCTGATTCTC
TTACTATTTTGGTTCCAGAGAGGAATTTTAAGTCATCATACCTTGCCAGC
ATAAGCGATATCACCAGCCAAGTCCCCCCCATTTTCCTATGATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_a10.b1 MSMg01no121_a10.b1 CHROMAT_FILE:
MSMg01no121_a10.b1 PHD_FILE: MSMg01no121_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:40 2005
         (305 letters)



>mm_chr7_120458018_120458722
          Length = 705

 Score =  520 bits (269), Expect = e-152
 Identities = 301/319 (94%), Gaps = 15/319 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacatggaggctca----catccgtaatgagatctggtgccctcttctggtgtgtctgac 56
           ||||||||||||||    ||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 188 cacatggaggctcacaaccatccgtaatgagatctggtgccctcttctggtgtgtctgaa 247

                                                                       
Query: 57  cacagctacagtgtacttacatttaataataaatt---------aaaaaaaaagaaagcc 107
            ||||||||||||||||||||||||||||||||||         ||||||||||||||||
Sbjct: 248 gacagctacagtgtacttacatttaataataaattaaaaaaaaaaaaaaaaaagaaagcc 307

                                                                       
Query: 108 tttacccagctgagaaaacaggtttcccatgag-catccagatggagccttaaccttctc 166
           |||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct: 308 tttacccagctgagaaaacaggtttcccat-aggcatccagatggagccttaaccttttc 366

                                                                       
Query: 167 ctcatcttccccagccttatatattcttattccctccaaggccatgcccagttaaaggca 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ctcatcttccccagccttatatattcttattccctccaaggccatgcccagttaaaggca 426

                                                                       
Query: 227 gagttgtatagaactggaggcggaacagctggacacgcaggtgaggaaggtcttgtgatt 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gagttgtatagaactggaggcggaacagctggacacgcaggtgaggaaggtcttgtgatt 486

                              
Query: 287 gtctccacatctccttggg 305
           |||||||||||||||||||
Sbjct: 487 gtctccacatctccttggg 505


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)