Query= MSMg01no121_i08.b1 MSMg01no121_i08.b1 CHROMAT_FILE:
MSMg01no121_i08.b1 PHD_FILE: MSMg01no121_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:19 2005
(214 letters)
>mm_chr7_86667713_86668325
Length = 613
Score = 398 bits (206), Expect = e-115
Identities = 212/214 (99%), Gaps = 1/214 (0%)
Strand = Plus / Plus
Query: 1 tgagcacctggccaccaccttcccacatagctggactgtggcccagccctgcaaacgaat 60
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 tgagcacctggccaccac-ttcccacatagctggactgtggcccagccctgcaaacaaat 259
Query: 61 ccctctccctagcactctatcccggactgtcccttgccttcctagaacaggaaagacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccctctccctagcactctatcccggactgtcccttgccttcctagaacaggaaagacaaa 319
Query: 121 taggtttcttctcatcactactattctggtgaacttgttactggtaacttgttttgtgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 taggtttcttctcatcactactattctggtgaacttgttactggtaacttgttttgtgtg 379
Query: 181 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 214
||||||||||||||||||||||||||||||||||
Sbjct: 380 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 413
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 613
Length adjustment: 9
Effective length of query: 205
Effective length of database: 604
Effective search space: 123820
Effective search space used: 123820
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no121_i08.g1 MSMg01no121_i08.g1 CHROMAT_FILE:
MSMg01no121_i08.g1 PHD_FILE: MSMg01no121_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:19 2005
(487 letters)
>mm_chr7_86762484_86763370
Length = 887
Score = 913 bits (472), Expect = 0.0
Identities = 484/490 (98%), Gaps = 4/490 (0%)
Strand = Plus / Minus
Query: 1 cttcccatgtacttccatcggcgccagatttacagccttacttgccactaggtaatacat 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 881 cttcccatgtacttccatcggcgccagatttacagccttacttgccaataggtaatacat 822
Query: 61 gtggctgagcattgatcattgtgtggggaactctgcagactccactatgccagcatgggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 gtggctgagcattgatcattgtgtggggaactctgcagactccactatgccagcatgggg 762
Query: 121 taccactgtcttgtggaaggaaggg----aggaaggaaggaaggaaggaaggaaggaagg 176
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 761 taccactgtcttgtggaaggaagggaggaaggaaggaaggaaggaaggaaggaaggaagg 702
Query: 177 aaggaaggaaggaagacataaataaaataaaataaagatgtaaagagttggggagatgtc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 aaggaaggaaggaagacataaataaaataaaataaagatgtaaagagttggggagatgtc 642
Query: 237 tatttatgttgagtagcacaagctgtatgtgaataatattccaacggtcattcctgtgcc 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tatttatgttgagtagcacaagctgtatgtgaataatattccaacggtcattcctgtgcc 582
Query: 297 ccctcggacaggcttgaaagactaaatgcatgtagatggcatagaactgatggttttcat 356
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ctctcggacaggcttgaaagactaaatgcatgtagatggcatagaactgatggttttcat 522
Query: 357 tttcttcctcatgcttttctgtacccgcccccccacgcttctcgggtctggggcagtctc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tttcttcctcatgcttttctgtacccgcccccccacgcttctcgggtctggggcagtctc 462
Query: 417 tcctttttcctttactttctattcattcatctcctttaaagttcatgaactgaaaaagga 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tcctttttcctttactttctattcattcatctcctttaaagttcatgaactgaaaaagga 402
Query: 477 aaggatctta 486
||||||||||
Sbjct: 401 aaggatctta 392
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
