Query= MSMg01no122_c11.b1 MSMg01no122_c11.b1 CHROMAT_FILE:
MSMg01no122_c11.b1 PHD_FILE: MSMg01no122_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:18 2005
(720 letters)
>mm_chr7_83581408_83582529
Length = 1122
Score = 1313 bits (679), Expect = 0.0
Identities = 711/725 (98%), Gaps = 8/725 (1%)
Strand = Plus / Plus
Query: 1 aaagggttcagaataaatggagagtttc----cctacatcacatgggaaatgttgacttc 56
|||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 aaagggttcagaataaatggagagtttcaaag---acatcacatgggaaatgttgacttc 257
Query: 57 catgtggtagatcaaagatgcagccagcaaactataaatcagtgttgtcacataatcaat 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 catgtggtagatcaaagatgcagccagcaaactataaatcagtgttgtcacataatcaat 317
Query: 117 agacagagacctagccatgtatggactaaaacaaagtaccttgcagggtcttgatataag 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agacagagacctagccatgtatggactaaaacaaagtaccttgcagggtcttgatataag 377
Query: 177 ggaggtgaacataaaggatccaagatatgtttgaaggacagg-ttttgccaaaagaccca 235
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 378 ggaggtgaacataaaggatccaagatatgtttgaaggacaggtttttgccaaaagaccca 437
Query: 236 gaaaatgccagatatctggagttgttgtggtgaagctgtgccctccaggggggacattaa 295
|||||||| |||||||||||| |||||||||| ||||||||||||| || ||||||||||
Sbjct: 438 gaaaatgctagatatctggagctgttgtggtggagctgtgccctcccggtgggacattaa 497
Query: 296 tttagaaggtcatgaagcattgttgctatggtggctattgaacaccttggccaaagagtc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tttagaaggtcatgaagcattgttgctatggtggctattgaacaccttggccaaagagtc 557
Query: 356 aaggcaagaaaatatgcagaacaccaaggggacattgggtctatgatacattagtaggga 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aaggcaagaaaatatgcagaacaccaaggggacattgggtctatgatacattagtaggga 617
Query: 416 ggctgttaattccctaatgaaagagggagaacaaccttacccttttctgagccttgtctt 475
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 618 ggctgttaattccctaatgaaagaggaagaacaaccttacccttttctgagccttgtctt 677
Query: 476 cactccagcacccacttgctgcaggtggtcttgggagtgctagtgtataagaaatagaag 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cactccagcacccacttgctgcaggtggtcttgggagtgctagtgtataagaaatagaag 737
Query: 536 gctgactgagactggggacacttcgggggcaccattgtcttgaatcaccaatatacctgt 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gctgactgagactggggacacttcgggggcaccattgtcttgaatcaccaatatacctgt 797
Query: 596 gagtagccacaataaactcattgattcaccaagctggccttgagcaagaatcacttcttt 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gagtagccacaataaactcattgattcaccaagctggccttgagcaagaatcacttcttt 857
Query: 656 gctctgtcatcttctgggaagtagatgtgtcttgcgacatcttctcaggaaagctcacac 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 gctctgtcatcttctgggaagtagatgtgtcttgcgacatcttctcaggaaagctcacac 917
Query: 716 catga 720
|||||
Sbjct: 918 catga 922
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 720
Length of database: 1122
Length adjustment: 10
Effective length of query: 710
Effective length of database: 1112
Effective search space: 789520
Effective search space used: 789520
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no122_c11.g1 MSMg01no122_c11.g1 CHROMAT_FILE:
MSMg01no122_c11.g1 PHD_FILE: MSMg01no122_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:18 2005
(625 letters)
>mm_chr7_83710905_83711929
Length = 1025
Score = 955 bits (494), Expect = 0.0
Identities = 586/628 (93%), Gaps = 19/628 (3%)
Strand = Plus / Minus
Query: 1 gttcacaggtaatgttagggaaatgtggttcttagagccagtttgccacatcttggatcc 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gttcacaggtaaagttagggaaatgtggttcttagagccagtttgccacatcttggatcc 571
Query: 61 ttgggaatgactggggagagacaacccccccacccccacccaaagcagagggttttttgt 120
|||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||
Sbjct: 570 ttgggaatgactggggagagacaatccccccacccccacccaatgcaaagggttttttgt 511
Query: 121 agatgatgagtagtgaaacttacctgaagattaagactgttttactggcatcccataagg 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 510 agatgatgagtagtgaaactcacctgaagattaagactgttttactggcatcccataagg 451
Query: 181 ctttttcttaaactttttaaccttttgcacagatagtgactagcagacacagaaggggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ctttttcttaaactttttaaccttttgcacagatagtgactagcagacacagaaggggaa 391
Query: 241 aaaggttatagtatgtttcttatgaatgttcagtccttaaagaatctactgccttctcct 300
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 390 aaaggttatagtatgtttcttatgaatgttcagcccttaaaaaatctactgccttctcct 331
Query: 301 taatcttttctcaaatacctaatcccccttcctcaattcatgacagcaaactcttcctca 360
||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||
Sbjct: 330 taatcttttctcaaatacctaattccccttcctctattcatgacagcaacctcttcctca 271
Query: 361 caatgaggtccatccacccagaatcccaagataaaatcccagatcttaagatagaaaagg 420
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct: 270 caatgaggtccatccacccagcatcccaagataaaaccccagatcttaagatagaaaggg 211
Query: 421 agaaagattgagatacatagatggattgattgatagatgatagacagacagacagacaga 480
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct: 210 agaaagattgagatacatagatggatggattgatagatgatagatagacagacagataga 151
Query: 481 cagacagacagacagacagacagatagatagatagatagatagatagatagatagataga 540
||| ||| |||||||||||||||||||||||| ||| ||| |||
Sbjct: 150 tagataga----------------tagatagatagatagatagatagacagacagacaga 107
Query: 541 cagagagtgagagaccgagacaacaaaaaaaaat---gaaaagagcatagacgccccatg 597
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 106 cagagagtgagagaccgagacaacaaaaaaaaaaaaagaaaagagcatagactccccatg 47
Query: 598 tccaatagaattatcctatataacaaag 625
||||||||||||||||||||||||||||
Sbjct: 46 tccaatagaattatcctatataacaaag 19
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
