Query= MSMg01no122_j12.b1 MSMg01no122_j12.b1 CHROMAT_FILE:
MSMg01no122_j12.b1 PHD_FILE: MSMg01no122_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:13 2005
(329 letters)
>mm_chr7_108961131_108961859
Length = 729
Score = 588 bits (304), Expect = e-172
Identities = 323/334 (96%), Gaps = 10/334 (2%)
Strand = Plus / Plus
Query: 1 gcatttttagttctcccacaggagcacatatggggtgtcactcctcagttaggatgagtt 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 gcatttttagttctcccacaggagcacatatggggcgtcactcctcagttaggatgagtt 260
Query: 61 cctcacactagactcctaaccaccagccaccccacttggcctctcctctcagggaatgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcacactagactcctaaccaccagccaccccacttggcctctcctctcagggaatgtt 320
Query: 121 ctcaggaacctgccttgcctaaccaccccctgcctcttactctcccatagcttggctttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcaggaacctgccttgcctaaccaccccctgcctcttactctcccatagcttggctttc 380
Query: 181 aaaacccctccactgtctcaccacaacaggggacaaggttcaagctatttcttagctcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaacccctccactgtctcaccacaacaggggacaaggttcaagctatttcttagctcct 440
Query: 241 gagcccagcagcagcgtgtggctaccaggagagagggaattatttac-----tctacagc 295
||||||||||||||||||||||||||||||||||||||| | || ||||||||
Sbjct: 441 gagcccagcagcagcgtgtggctaccaggagagagggaa--a---acacaactctacagc 495
Query: 296 cttgaggctggagcagaccagctcctgccctgag 329
||||||||||||||||||||||||||||||||||
Sbjct: 496 cttgaggctggagcagaccagctcctgccctgag 529
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space: 230400
Effective search space used: 230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no122_j12.g1 MSMg01no122_j12.g1 CHROMAT_FILE:
MSMg01no122_j12.g1 PHD_FILE: MSMg01no122_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:13 2005
(544 letters)
>mm_chr7_109112932_109113876
Length = 945
Score = 953 bits (493), Expect = 0.0
Identities = 532/545 (97%), Gaps = 1/545 (0%)
Strand = Plus / Minus
Query: 1 acatagtgagactgtctcaaaacctttcaaaacacaccaacaaacaaacaaacagcaaaa 60
|||||||||||||||||||||| | ||||||| || |||||||||||||| |||||||
Sbjct: 600 acatagtgagactgtctcaaaaacaaacaaaacaaacaaacaaacaaacaaatagcaaaa 541
Query: 61 cttatcagaagcaacaagcattgaagaaaagtgttcctcgagggaaatgctggtgatagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 cttatcagaagcaacaagcattgaagaaaagtgttcctcgagggaaatgctggtgatagc 481
Query: 121 tcagggtaagaaaaggaagccgaaaggaaaggcaggcagtcactgcaacttgttggagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tcagggtaagaaaaggaagccgaaaggaaaggcaggcagtcactgcaacttgttggagag 421
Query: 181 atgtactgtttccaaggcctgacctccagcccatttaccatcaccctcttctccctctcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 atgtactgtttccaaggcctgacctccagcccatttaccatcaccctcttctccctctcc 361
Query: 241 agggcagtggctggttaatgagtcactgttgcaaagcctgaagtttcccg-ggagaaaag 299
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 360 agggcagtggctggttaatgagtcactgttgcaaagcctgaagcttccccaggagaaaag 301
Query: 300 cagagggcaaaaacaactcccagagaggactgattagtcaagtccaagagtccccactca 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 300 cagagggcaaaaacaactcccagagaggactgattagtcaagtccaagagtccccactta 241
Query: 360 gttctccctcaagatggcctttctacaaaactaagaacctgctgggcaaggtggcgcacg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gttctccctcaagatggcctttctacaaaactaagaacctgctgggcaaggtggcgcacg 181
Query: 420 cctttaatcccagcacttgggaggcagaggcaggtggatttctgagtttgaggccagcct 479
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 cctttaatcccagcactcaggaggcagaggcaggtggatttctgagtttgaggccagcct 121
Query: 480 ggtctacagagtgagttccaggacgccagggctacacagagaaaccctgtcttggaaaaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 ggtctacagagtgagttccaggacgccagggctacacagagaaaccctgtcttggaaaaa 61
Query: 540 aaaaa 544
|||||
Sbjct: 60 aaaaa 56
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 945
Length adjustment: 10
Effective length of query: 534
Effective length of database: 935
Effective search space: 499290
Effective search space used: 499290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
