Query= MSMg01no123_f09.b1 MSMg01no123_f09.b1 CHROMAT_FILE:
MSMg01no123_f09.b1 PHD_FILE: MSMg01no123_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:56 2005
(318 letters)
>mm_chr7_87761636_87762352
Length = 717
Score = 551 bits (285), Expect = e-161
Identities = 309/321 (96%), Gaps = 11/321 (3%)
Strand = Plus / Plus
Query: 1 tcagggagaatgtgagatcaaaatactacc-cttta--ctatcttcactcctgccctctg 57
|||||||||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 201 tcagggagaatgtgagatcaaaatactaccac---accctatcttcactcctgccctctg 257
Query: 58 atggcacagtgggatggtctagcagttgtgtgacgtcaacacaacagcactgaatgcaga 117
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 258 atggcacagtgggatggtctagcagttgtgtgacgtcaacacaacag-actgaatgcaga 316
Query: 118 caaggactctgcgtgccagaggtataacaatgcagctattcttgtttgttttagaaaatg 177
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 caacgactctgcgtgccagaggtataacaatgcagctattcttgtttgttttagaaaatg 376
Query: 178 atattgtgtttcttttttaaaaaaagaaatatatatatatatatacacacacactggcat 237
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 377 atattgtgtttcttttttaaaaaaagaaatatatatatata----cacacacactggcat 432
Query: 238 gtagtgggttgattgttgtatgctgaaacgcaccagtaggtatattttttcatggctcta 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gtagtgggttgattgttgtatgctgaaacgcaccagtaggtatattttttcatggctcta 492
Query: 298 cattagccttctcttagcagc 318
|||||||||||||||||||||
Sbjct: 493 cattagccttctcttagcagc 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 717
Length adjustment: 9
Effective length of query: 309
Effective length of database: 708
Effective search space: 218772
Effective search space used: 218772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no123_f09.g1 MSMg01no123_f09.g1 CHROMAT_FILE:
MSMg01no123_f09.g1 PHD_FILE: MSMg01no123_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:56 2005
(282 letters)
>mm_chr7_87884753_87885435
Length = 683
Score = 530 bits (274), Expect = e-155
Identities = 280/282 (99%), Gaps = 1/282 (0%)
Strand = Plus / Minus
Query: 1 agcccagtgctgtttttaaaaataaatttgatgattttattcctctattcaaaagttttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 agcccagtgctgtttttaaaaataaatttgatgattttattcctctattcaaaagttttc 423
Query: 61 atcagtccaagccccctgggctgctgagcagtgtgcgtt-gggggtatcctgcatacttt 119
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 422 atcagtcgaagccccctgggctgctgagcagtgtgcgttggggggtatcctgcatacttt 363
Query: 120 acttgtagatttttcactagtgctttgtgccagtgtggatgggggtcatggatacaggaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 acttgtagatttttcactagtgctttgtgccagtgtggatgggggtcatggatacaggaa 303
Query: 180 tgaggaatgaattaaaggcctagcttttaattactgagttactaattagtgagtcagcct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tgaggaatgaattaaaggcctagcttttaattactgagttactaattagtgagtcagcct 243
Query: 240 gcccctgggacccacacctgaggtcttcgtgcccagtcctca 281
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gcccctgggacccacacctgaggtcttcgtgcccagtcctca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 683
Length adjustment: 9
Effective length of query: 273
Effective length of database: 674
Effective search space: 184002
Effective search space used: 184002
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
